These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1169 fasta sequence [AGCGATAATTATCCAAGTTATCGTGTATTTATTGTTAGTATATTATTTAAGAAAATTGTGAAACTAATGATTTTTGCATTTCATTGTTGTCAAAATAATATCTGACCGTGCTCTACGTGAAACGGTGTCACGTTTCATTGGTGAAAGAAATTGTTTATTTTTCGTTTGCTGCAAATATCGGTGACAACGAAGGAAAAAGATTAACATACGGTAAAATCAAAATCGAGGAATAAGGAAAAATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTAGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACGCTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAGGCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGGGGGCTCAGTATACCGCAGNGTTGCTGTCGCGAGATTCAACCCGGACAGCGATTCAACTGTAACTCTGGACCAGACACAGTGAACCCTTCGAATGCCTATCTCGTCGGTTGCATCAATGGAACGCAGATTTACTTGCAGAAGCATGCGACGATCATGGGTGGCGCTGGTATTGCAGTCGCGTGTTTGATGTTTTTCGGCATGATTTTCTCGTGCATTCTCTTCAAGTTGATAGAATGACGGGAGAGTAGCGTGCTTTAAAAGACAACTTCGTTCTTCGTGTCTAAACTAACGAAGAGGAAGAAGTGGATGTCAGCCGTCCTCGAGCGACTCATGAATTCATAATCAATGTCATCGTCATTGAGTGCATCTAAGCTGAAGTACGAGAATCAAAATGCATCTTCACGCGCATCTTTTCAATGTACAGTTCTCACCATTTTTTCTTCTTTTCTT] [+] EMBL BI514468 [AGCGATAATTATCCAAGTTATCGTGTATTTATTGTTAGTATATTATTTAAGAAAATTGTGAAACTAATGATTTTTGCATTTCATTGTTGTCAAAATAATATCTGACCGTGCTCTACGTGAAACGGTGTCACGTTTCATTGGTGAAAGAAATTGTTTATTTTTCGTTTGCTGCAAATATCGGTGACAACGAAGGAAAAAGATTAACATACGGTAAAATCAAAATCGAGGAATAAGGAAAAATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTAGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAA ] [+] EMBL BI512010 [AGCGATAATTATCCAAGTTATCGTGTATTTATTGTTAGTATATTATTTAAGAAAATTGTGAAACTAATGATTTTTGCATTTCATTGTTGTCAAAATAATATCTGACCGTGCTCTACGTGAAACGGTGTCACGTTTCATTGGTGAAAGAAATTGTTTATTTTTCGTTTGCTGCAAATATCGGTGACAACGAAGGAAAAAGATTAACATACGGTAAAATCAAAATCGAGGAATAAGGAAAAATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTAGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCAC ] [+] EMBL BI513473 [ AAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTAGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACGCTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAGGCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGGG ] [+] EMBL BI514029 [ TTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACGCTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAGGCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGGGGGCTCAGTATACCGCAGNGTTGCTGTCGCGAGATTCAACCCGGACAGCGATTCAACTGTAACTCTGGACCAGACACAGTGAACCCTTCGAATGCCTATCTCGTCGGTTGCATCAATGGAACGCAGATTTACTTGCAGAAGCATGCGACGATCATGGGTGGCGCTGGTATTGCAGTCGCGTGTTTGATGTTTTTCGGCATGATTTTCTCGTGCATTCTCTTC ] [+] EMBL BI514125 [ TTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACGCTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAGGCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGGGGGCTCAGTATACCGCAGNGTTGCTGTCGCGAGATTCAACCCGGACAGCGATTCAACTGTAACTCTGGACCAGACACAGTGAACCCTTCGAATGCCTATCTCGTCGGTTGCATCAATGGAACGCAGNTTTACTTGCAGAAGCATGCGACGATCATGGGTGGCGCTG ] [+] EMBL BI507937 [ GTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACGCTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAGGCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGGGGGCTCAGTATACCGCAGAGTTGCTGTCGCGAGATTCAACCCGGACAGCGATTCAACTGTAACTCTGGACCAGACACAGTGAACCCCTCGAATGCCTATCTCGTCGGTTGCATCAATGGAACGCAGATTTACTTGCAGAAGCATGCGACGATCATGGGTGGCGCTGGTATTGCAGTCGCGTGTTTGATGTTTTTCGGCATGATTTTCTCGTGCATTCTCTTCAAGTTGATAGAATGACGGGAGAGTAGCGTGCTTTAAAAGACAACTTCGTTCTTCGTGTCTAAACTAACGAAGAGGAAGAAGTGGATGTCAGCCGTCCTCGAGCGACTCATGAATTCATAATCAATGTCATCGTCATTGAGTGCATCTAAGCTGAAGTACGAGAATCAAAATGCATCTTCACGCGCATCTTTTCAATGTACAGTTCTCACCATTTTTTCTTCTTTTCTT] consensusID : consensus_138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [GTAATGAGCGATGTTTTCTCGCAATGGCGCATGCGCAAATCGAGGAATAAGGAAAAATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTGGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAA] [+] EMBL BI516599 [GTAATGAGCGATGTTTTCTCGCAATGGCGCATGCGCAAATCGAGGAATAAGGAAAAATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTTGTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTGTTGGACAAAGTACCATGGATAGGCGAACTGGTGGGGAACGATTTGTTAACAGGTGCTATTTACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGTGCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTCGTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_138#0 AGCGATAATTATCCAAGTTATCGTGTATTTATTGTTAGTATATTATTTAAGAAAATTGTG 60 consensus_138#1 ------------------------------------------------------------ consensus_138#0 AAACTAATGATTTTTGCATTTCATTGTTGTCAAAATAATATCTGACCGTGCTCTACGTGA 120 consensus_138#1 ------------------------------------------------------------ consensus_138#0 AACGGTGTCACGTTTCATTGGTGAAAGAAATTGTTTATTTTTCGTTTGCTGCAAATATCG 180 consensus_138#1 ------------------------------------------------------------ consensus_138#0 GTGACAACGAAGGAAAAAGATTAACATACGGTAAAATCA-AAATCGAGGAATAAGGAAAA 239 consensus_138#1 ---GTAATGAGCGATGTTTTCTCGCA-ATGGCGCATGCGCAAATCGAGGAATAAGGAAAA 56 ** ** ** * ** * ** * * ******************** consensus_138#0 ATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTT 299 consensus_138#1 ATGGGATACGGCACAGAAATGGATGGCTGCGGTCGTTGCATGAAGTATTCCTTGTTCTTT 116 ************************************************************ consensus_138#0 GTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTG 359 consensus_138#1 GTCAACTTAGTAATTTTCATCGGTGGAGTGGCGATAATTGGATTAGCAACGTGGGCTCTG 176 ************************************************************ consensus_138#0 TTGGACAAAGTACCATGGATAGGCGAACTAGTGGGGAACGATTTGTTAACAGGTGCTATT 419 consensus_138#1 TTGGACAAAGTACCATGGATAGGCGAACTGGTGGGGAACGATTTGTTAACAGGTGCTATT 236 ***************************** ****************************** consensus_138#0 TACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGT 479 consensus_138#1 TACGTTCTATTGGTCGCTGGGATCATCGTTGCTCTAACATCGTTCTTCGGCTGCTTGGGT 296 ************************************************************ consensus_138#0 GCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTC 539 consensus_138#1 GCATCTCGAGAAGTTAAATGCATGCTTCTCACGTACTTCATCATCGTGTTCCTTCTGTTC 356 ************************************************************ consensus_138#0 GTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAAAACTAATGAACACG 599 consensus_138#1 GTAACCATATTAATTGGCGGAGTGCTCGCGTACGTGTTCCGTGAAA-------------- 402 ********************************************** consensus_138#0 CTTGAGAGGGAAATGTCGAGTTCGATGAGACTTTACGATAGTCGTAAAGCGGTTAGAGAG 659 consensus_138#1 ------------------------------------------------------------ consensus_138#0 GCCTGGGACATGACACAGTCGAAGCTCCATTGCTGCGGTGTAAATGGTTGGAGAGATTGG 719 consensus_138#1 ------------------------------------------------------------ consensus_138#0 GGGCTCAGTATACCGCAGNGTTGCTGTCGCGAGATTCAACCCGGACAGCGATTCAACTGT 779 consensus_138#1 ------------------------------------------------------------ consensus_138#0 AACTCTGGACCAGACACAGTGAACCCTTCGAATGCCTATCTCGTCGGTTGCATCAATGGA 839 consensus_138#1 ------------------------------------------------------------ consensus_138#0 ACGCAGATTTACTTGCAGAAGCATGCGACGATCATGGGTGGCGCTGGTATTGCAGTCGCG 899 consensus_138#1 ------------------------------------------------------------ consensus_138#0 TGTTTGATGTTTTTCGGCATGATTTTCTCGTGCATTCTCTTCAAGTTGATAGAATGACGG 959 consensus_138#1 ------------------------------------------------------------ consensus_138#0 GAGAGTAGCGTGCTTTAAAAGACAACTTCGTTCTTCGTGTCTAAACTAACGAAGAGGAAG 1019 consensus_138#1 ------------------------------------------------------------ consensus_138#0 AAGTGGATGTCAGCCGTCCTCGAGCGACTCATGAATTCATAATCAATGTCATCGTCATTG 1079 consensus_138#1 ------------------------------------------------------------ consensus_138#0 AGTGCATCTAAGCTGAAGTACGAGAATCAAAATGCATCTTCACGCGCATCTTTTCAATGT 1139 consensus_138#1 ------------------------------------------------------------ consensus_138#0 ACAGTTCTCACCATTTTTTCTTCTTTTCTT 1169 consensus_138#1 ------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |