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Apis mellifera
cluster # 141 cluster # 141       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_141#0 length = 978 sequences # 6  
consensus_141#1 length = 536 sequences # 1  

consensusID : consensus_141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 978
fasta sequence
                              [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCGAGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT--TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAGTGTGCTCTATGTCATGCTA]

[+] EMBL BI514039             [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCGAGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI514133             [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BI517148             [                                                                                                                                                                                                                                                                                                                                               CGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAA TTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT  TCTTGATTCCCCATTATTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATAC                                                                                                                                                                         ]
[-] EMBL BI515513             [                                                                                                                                                                                                                                                                                                                                                                                                    TATCGCTCCCCGCAATCACTGAGCATCCNTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT  TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA                                                                               ]
[-] EMBL BI516388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAGCCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT  TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA                                                                               ]
[-] EMBL BI511839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTCCTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAGTGTGCTCTATGTCATGCTA]


>consensus_141#0 TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCG TTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCT TTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAAT AATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGT ATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCG AGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTAT TTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGG TCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTT ATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTT TCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGA AACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCT TGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGA TCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGG GACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACAT TACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGAT ATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAGT GTGCTCTATGTCATGCTA



consensusID : consensus_141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence
                              [TATTCTTCCGGACCAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT]

[+] EMBL BI515791             [TATTCTTCCGGACCAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT]


>consensus_141#1 TATTCTTCCGGACCAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCC CCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCC CTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCC GGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAAT CATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTT CTCTATCTTCCCGATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAA ACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATT ACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAA GAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_141#0      TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCG 60
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      TTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCT 120
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      TTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAAT 180
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      AATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGT 240
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      ATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCG 300
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      AGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTAT 360
consensus_141#1      ------------------------------------------------------------
                                                                                 

consensus_141#0      TTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGG 420
consensus_141#1      -----------------------------------------------TATTCTTCCGGAC 13
                                                                    *   * ***    

consensus_141#0      TCCGGAAGAATAG-AATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCT 479
consensus_141#1      CAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCT 73
                        *** *   **  *** *** *************************************

consensus_141#0      TATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGT 539
consensus_141#1      TATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGT 133
                     ************************************************************

consensus_141#0      TTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAG 599
consensus_141#1      TTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAG 193
                     ************************************************************

consensus_141#0      AAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGC 659
consensus_141#1      AAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGC 253
                     ************************************************************

consensus_141#0      TTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCG 719
consensus_141#1      TTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCG 313
                     ************************************************************

consensus_141#0      ATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAG 779
consensus_141#1      ATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAG 373
                     ************************************************************

consensus_141#0      GGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACA 839
consensus_141#1      GGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACA 433
                     ************************************************************

consensus_141#0      TTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA 899
consensus_141#1      TTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA 493
                     ************************************************************

consensus_141#0      TATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAG 959
consensus_141#1      TATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT----------------- 536
                     ****************************************                    

consensus_141#0      TGTGCTCTATGTCATGCTA 978
consensus_141#1      -------------------
                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)