These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CGAATTGCTATCGATCGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGATGCATTGACAAAATTACGTCCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGTAAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTCTCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGCCTTCGGCTCTCGAACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAATTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCAGGAATAAGACAATAAGAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACGTGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAAATTCTCTATCGAGCTCCCCGTTTATATTTAACTGAAACGATGATGACTCGTCCTTGGCTGTCGAACGACTATTCGCGGCATCGACAGCACGAATACTTGTAGTATTTGATCCGGCAATAACCATTCTTCACGANNACCGAGCAATCTGGATGCTTGTCAACGCATTCCGA] [+] EMBL BI506379 [CGAATTGCTATCGATCGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGATGCATTGACAAAATTACGTCCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGTAAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTCTCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGCCTTCGGCTCTCGAACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAATTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCAGGAATAAGACAATAAGAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACGTGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAAATTCTCTATCGAGCTCCCCGTTTATATTTAACTGAAACGATGATGACTCGTCCTTGGCTGTCGAACGACTATTCGCGGCATCGACAGCACGAATACTTGTAGTATTTGATCCGGCAATAACCATTCTTCACGANNACCGAGCAATCTGGATGCTTGTCAACGCATTCCGA] consensusID : consensus_1497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGATGCATTGACAAAATTACGTTCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGTAAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTTTCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGTCTTCGGCTCTCGAACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAATTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCGGGAATAAGACAATAAGAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACGTGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAGATTCTCTATCGAGCTCCCCGTTTATATTTAACTGGAAAGAGGAAAGCAACGAGTTT] [+] EMBL BI506027 [CGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGATGCATTGACAAAATTACGTTCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGTAAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTTTCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGTCTTCGGCTCTCGAACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAATTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCGGGAATAAGACAATAAGAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACGTGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAGATTCTCTATCGAGCTCCCCGTTTATATTTAACTGGAAAGAGGAAAGCAACGAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1497#0 CGAATTGCTATCGATCGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGAT 60 consensus_1497#1 ---------------CGTTGTTGAAGTTATTTTGGTGTCAAGTACGGGATCAAGATCGAT 45 ********************************************* consensus_1497#0 GCATTGACAAAATTACGTCCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGT 120 consensus_1497#1 GCATTGACAAAATTACGTTCCTGCAACTGTTCGCTTGTACAGAGAGATATTTACACACGT 105 ****************** ***************************************** consensus_1497#0 AAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTC 180 consensus_1497#1 AAACACATATACATGCCCCGTACGATACGAGTTTCTGCAGTGTACAGACGCATCATACTT 165 *********************************************************** consensus_1497#0 TCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGCCTTCGGCTCTCGA 240 consensus_1497#1 TCTCTCCTACTCGACGGGGGGACGACGTCGTGCTCCCTTTTCAACGTCTTCGGCTCTCGA 225 ********************************************** ************* consensus_1497#0 ACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAA 300 consensus_1497#1 ACGACTAGTTGATTTCTCGTGAATTTTCACCTACTATCCCACTTTCCGGATTTAACGGAA 285 ************************************************************ consensus_1497#0 TTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCAGGAATAAGACAATAA 360 consensus_1497#1 TTCCTCGTGGAATTAAATAATCGTTCTTCCGCAGCGTGCCGCGCGGGAATAAGACAATAA 345 ******************************************** *************** consensus_1497#0 GAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACG 420 consensus_1497#1 GAAGGAATAAAGCTACGCGGGATTAGCTGATTATCGCGTTAAATAAAATTGTACATAACG 405 ************************************************************ consensus_1497#0 TGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAAATTCTCTATCGAGCTCCCCGTTT 480 consensus_1497#1 TGATCGTCTCTTTGTCACAGTCTTATCACTCGCTAAGATTCTCTATCGAGCTCCCCGTTT 465 ************************************ *********************** consensus_1497#0 ATATTTAACTGAAACGATGATGACT-CGTCCTTGGCTGTCGAACGACTATTCGCGGCATC 539 consensus_1497#1 ATATTTAACTGGAAAGAGGAAAGCAACGAGTTT--------------------------- 498 *********** ** ** ** * ** ** consensus_1497#0 GACAGCACGAATACTTGTAGTATTTGATCCGGCAATAACCATTCTTCACGANNACCGAGC 599 consensus_1497#1 ------------------------------------------------------------ consensus_1497#0 AATCTGGATGCTTGTCAACGCATTCCGA 627 consensus_1497#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |