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Apis mellifera
cluster # 1574 cluster # 1574       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1574#0 length = 686 sequences # 1  
consensus_1574#1 length = 586 sequences # 1  

consensusID : consensus_1574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [TTGGATTTGGAATTTCTGGAGGTTCCCATTCTCCATCCATTTCAACATCCCAATCATCAGGTTTTACAGAATCAGGATTAGGTATCATTGGTGGTTCATCTTCAAGCCATCCTTCAGGCATAATATCATCTTCATCAACAATTTGTGCTGGAGCATCTTCATCCCAATCATCTGGTTTAATAGCTGATAGATCAGGAATTTTTTCTTTGTCATCCCAATCTTCTGGTTGAATATCAGTTGGATCTTCTATTTCCAAAGGTGGATTGACTGGTGGAGTAAAATCATCCAACAAGGATCCAGAATTTACTATTTTATTATCAATCTTAATTTCAAAACTATTATCTGGCCGAATGATCAAAGTATATAGATGAGGTTGCTTATCTTTGAAAAAATCTTCTAAACGCTCTCTTGGTTTTTTGCAATGCTTCTCTTCTATAGAACCATTTAAAGGATTTTTATGTCGAAAGATAAAATGTAGCTTATGATCATTTCCACATTTATCAGGACCAAACATTATAGTATAAGGAGTTTTATCATGGAATTTTTTTAAATCTTGATGTTCTGGATGTAAAGTAAGCAATTTTAAATAAGCTCCTCCACATTCTTGACTATCTTGAAAATTCACTTCATATTGTACAATTAATGGTTTATCATTGAAATAAAATGGTGTAAATAATTTAGTAGAT]

[+] EMBL BI509107             [TTGGATTTGGAATTTCTGGAGGTTCCCATTCTCCATCCATTTCAACATCCCAATCATCAGGTTTTACAGAATCAGGATTAGGTATCATTGGTGGTTCATCTTCAAGCCATCCTTCAGGCATAATATCATCTTCATCAACAATTTGTGCTGGAGCATCTTCATCCCAATCATCTGGTTTAATAGCTGATAGATCAGGAATTTTTTCTTTGTCATCCCAATCTTCTGGTTGAATATCAGTTGGATCTTCTATTTCCAAAGGTGGATTGACTGGTGGAGTAAAATCATCCAACAAGGATCCAGAATTTACTATTTTATTATCAATCTTAATTTCAAAACTATTATCTGGCCGAATGATCAAAGTATATAGATGAGGTTGCTTATCTTTGAAAAAATCTTCTAAACGCTCTCTTGGTTTTTTGCAATGCTTCTCTTCTATAGAACCATTTAAAGGATTTTTATGTCGAAAGATAAAATGTAGCTTATGATCATTTCCACATTTATCAGGACCAAACATTATAGTATAAGGAGTTTTATCATGGAATTTTTTTAAATCTTGATGTTCTGGATGTAAAGTAAGCAATTTTAAATAAGCTCCTCCACATTCTTGACTATCTTGAAAATTCACTTCATATTGTACAATTAATGGTTTATCATTGAAATAAAATGGTGTAAATAATTTAGTAGAT]


>consensus_1574#0 TTGGATTTGGAATTTCTGGAGGTTCCCATTCTCCATCCATTTCAACATCCCAATCATCAG GTTTTACAGAATCAGGATTAGGTATCATTGGTGGTTCATCTTCAAGCCATCCTTCAGGCA TAATATCATCTTCATCAACAATTTGTGCTGGAGCATCTTCATCCCAATCATCTGGTTTAA TAGCTGATAGATCAGGAATTTTTTCTTTGTCATCCCAATCTTCTGGTTGAATATCAGTTG GATCTTCTATTTCCAAAGGTGGATTGACTGGTGGAGTAAAATCATCCAACAAGGATCCAG AATTTACTATTTTATTATCAATCTTAATTTCAAAACTATTATCTGGCCGAATGATCAAAG TATATAGATGAGGTTGCTTATCTTTGAAAAAATCTTCTAAACGCTCTCTTGGTTTTTTGC AATGCTTCTCTTCTATAGAACCATTTAAAGGATTTTTATGTCGAAAGATAAAATGTAGCT TATGATCATTTCCACATTTATCAGGACCAAACATTATAGTATAAGGAGTTTTATCATGGA ATTTTTTTAAATCTTGATGTTCTGGATGTAAAGTAAGCAATTTTAAATAAGCTCCTCCAC ATTCTTGACTATCTTGAAAATTCACTTCATATTGTACAATTAATGGTTTATCATTGAAAT AAAATGGTGTAAATAATTTAGTAGAT



consensusID : consensus_1574#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [TACCTAATCCTGATTCTGTAAAACCTGATGATTGGGATGTTGAAATGGATGGAGAATGGGAACCTCCAGAAATTCCAAATCCAAAATGTGCTGATGCACCTGGATGTGGATTATATAAGCAAAAAATGAAAAAAAATCCTCGCTATAAAGGCAAATGGTCACCACCTTTGATTAATAATCCAAATTATAAAGGCAAATGGAAGCCAAAATTAATACATAATCCTAATTATTTTAATGATGAACATCCATTCCAAATGATGCCTATCTTTGCTGTAGGCTTTGAACTTTGGTCAATGTCTACAGACATCCTCTTTGACAATATTATTATTACTCATGATGAAGAAGTAGCAAAATATTGGGCTGATAATACATTTGAAGTTCGTCGCGCTCAAATTGCAGAGGAAAGTTGGAGTGTATGGCGTCAAATTGGTACATTTACTGCAGAACATCCTTGGATATGGGGTATATATATAATAGCTCCTGGCTTGCCCATATTGCTAGTAATATATTGTTGCTGCTTTGCTTCTCAGGATAAATATGATTTAAAAGATGATGATAAACAATCTTTAGTGACAAATGAACAAGT]

[+] EMBL BI505780             [TACCTAATCCTGATTCTGTAAAACCTGATGATTGGGATGTTGAAATGGATGGAGAATGGGAACCTCCAGAAATTCCAAATCCAAAATGTGCTGATGCACCTGGATGTGGATTATATAAGCAAAAAATGAAAAAAAATCCTCGCTATAAAGGCAAATGGTCACCACCTTTGATTAATAATCCAAATTATAAAGGCAAATGGAAGCCAAAATTAATACATAATCCTAATTATTTTAATGATGAACATCCATTCCAAATGATGCCTATCTTTGCTGTAGGCTTTGAACTTTGGTCAATGTCTACAGACATCCTCTTTGACAATATTATTATTACTCATGATGAAGAAGTAGCAAAATATTGGGCTGATAATACATTTGAAGTTCGTCGCGCTCAAATTGCAGAGGAAAGTTGGAGTGTATGGCGTCAAATTGGTACATTTACTGCAGAACATCCTTGGATATGGGGTATATATATAATAGCTCCTGGCTTGCCCATATTGCTAGTAATATATTGTTGCTGCTTTGCTTCTCAGGATAAATATGATTTAAAAGATGATGATAAACAATCTTTAGTGACAAATGAACAAGT]


>consensus_1574#1 TACCTAATCCTGATTCTGTAAAACCTGATGATTGGGATGTTGAAATGGATGGAGAATGGG AACCTCCAGAAATTCCAAATCCAAAATGTGCTGATGCACCTGGATGTGGATTATATAAGC AAAAAATGAAAAAAAATCCTCGCTATAAAGGCAAATGGTCACCACCTTTGATTAATAATC CAAATTATAAAGGCAAATGGAAGCCAAAATTAATACATAATCCTAATTATTTTAATGATG AACATCCATTCCAAATGATGCCTATCTTTGCTGTAGGCTTTGAACTTTGGTCAATGTCTA CAGACATCCTCTTTGACAATATTATTATTACTCATGATGAAGAAGTAGCAAAATATTGGG CTGATAATACATTTGAAGTTCGTCGCGCTCAAATTGCAGAGGAAAGTTGGAGTGTATGGC GTCAAATTGGTACATTTACTGCAGAACATCCTTGGATATGGGGTATATATATAATAGCTC CTGGCTTGCCCATATTGCTAGTAATATATTGTTGCTGCTTTGCTTCTCAGGATAAATATG ATTTAAAAGATGATGATAAACAATCTTTAGTGACAAATGAACAAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1574#0      TTGGATTTGGAATTTCTGGAGGTTCCCATTCTCCATCCATTTCAACATCCCAATCATCAG 60
consensus_1574#1      ----------------------TACCTAATCCTGATTCTGTAAAACCTGATGATTGGGAT 38
                                            * ** * **   ** *  *  *** *    **    * 

consensus_1574#0      GTTTTACAGAATCAGGATTAGGTATCATTGGTGGTTC-ATCTTCAAGCCATCCT--TCAG 117
consensus_1574#1      GTTGAAATGGATGGAGAATGGGAACCTCCAGAAATTCCAAATCCAAAATGTGCTGATGCA 98
                      ***  *  * **   ** * ** * *    *   *** *  * ***    * **  *   

consensus_1574#0      GCATAATATCATCTTCATCAACAATTTGTGCTGGAGCATCTTCATCCCAATCATCTGGTT 177
consensus_1574#1      CCTGGATGTGGATTATATAAGCAAAAAATGAAAAAAAATCCTCGC-------------TA 145
                       *   ** *    *  ** * ***    **    *  *** **               * 

consensus_1574#0      TAATAGCTGATAGATCAGGAATTTTTTCTTTGTCATCCCAATCTTCTGGTTGAATATCAG 237
consensus_1574#1      TAAAGGCAAATGG-TCACCA-CCTTTGATTAATAATCCAAATTATAAAGGCAAATGGAAG 203
                      ***  **  ** * ***  *   ***  **  * **** ***  *   *   ***   **

consensus_1574#0      TTGGATCTTCTATTTCCAAAGGTGGATTGACTGGTGGAGTAAAATCATCCAACAAGGATC 297
consensus_1574#1      CCAAAATTAATACAT--AATCCTAATTATTTTAATGATGAACATCCATTCCAAATGATGC 261
                          *  *  **  *  **   *   *    *  **  * * *  *** * * * *   *

consensus_1574#0      CAGAATTTACTATTTTATTATCAATCTTAATTTCAAAACTATTATCTGGCCGAATGATCA 357
consensus_1574#1      CTATCTTTGCTGTAGGCTT--TGAACTTTGGTCAATGTCTACAGACATCCTCTTTGACAA 319
                      *    *** ** *    **    * ***   *  *   ***    *   *    ***  *

consensus_1574#0      AAGTAT-ATAGATGAGGTTGCTTATCTTTGAAAAAATCTTCTAAACGCTCTCTTGGTTTT 416
consensus_1574#1      TATTATTATTACTCATGATGAAGAAGTAGCAAAATATTGGGCTGATAATACATTTGAAGT 379
                       * *** **   * * * **   *  *   **** **       *   *   ** *   *

consensus_1574#0      TTGCAATGCTTCTCTTCTATAGAACCATTTAAAGGATTTTTATGTCGAAAGATAAAATGT 476
consensus_1574#1      TCGTCGCGCTCAAATTGCAGAGGAAAGTTGGAGTG--TATGGCGTCAAATTGGTACATTT 437
                      * *    ***    **  * ** *   **  *  *  * *   *** **     * ** *

consensus_1574#0      AGCTTATGATCATTTCCACATTTATCAGGACCAAACATTATAGTATAAGGAGTTTTATCA 536
consensus_1574#1      A-CTGCAGAACATCCTTGGAT--ATGGGGTATATATATAATAGCTCCTGGCTTGCCCATA 494
                      * **   ** ***      **  **  **   * * ** ****     **  *      *

consensus_1574#0      TGGAATTTTTTTAAATCTTGATGTTCTGGATGTAAAG-TAAGCA--ATTTTAAATAAGCT 593
consensus_1574#1      TTGCTAGTAATATATTGTTGCTGCTTTGCTTCTCAGGATAAATATGATTTAAAAGATGAT 554
                      * *    *  *  * * *** ** * **  * * * * ***  *  **** *** * * *

consensus_1574#0      CCTCCACATTCTTGACTATCTTGAAAATTCACTTCATATTGTACAATTAATGGTTTATCA 653
consensus_1574#1      GATAAACAATCTTTAGTGACAAATGAACAAGT---------------------------- 586
                        *  *** **** * *  *     **                                 

consensus_1574#0      TTGAAATAAAATGGTGTAAATAATTTAGTAGAT 686
consensus_1574#1      ---------------------------------
                                                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)