These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTCTTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGAAAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGAAAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAGGTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACATCTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAGTTAGAGATGGATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATGAAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTTTTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT] [+] EMBL BI512969 [GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTCTTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGAAAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGAAAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAGGTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACATCTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAGTTAGAGATGGATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATGAAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTTTTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT] consensusID : consensus_1964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [AGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATATTAATCATGCCTTTAAAGAGGATAGTCCCTGCTTCCTATGTTTCATCGCAAAATAATTCACCTAAACTATTCTGAAGCATGAGCTGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAATGCCGTCGCCATGGTGGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCTATTCATGTGTTGAAAAATTCGCAAAAGGAATCGAGGAAGCAAGAAAAGAAATCGCACAGAAATTCAACATCTGACTATATAACTAATTAGAAGAAAAAAAA] [+] EMBL BI504489 [AGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATATTAATCATGCCTTTAAAGAGGATAGTCCCTGCTTCCTATGTTTCATCGCAAAATAATTCACCTAAACTATTCTGAAGCATGAGCTGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAATGCCGTCGCCATGGTGGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCTATTCATGTGTTGAAAAATTCGCAAAAGGAATCGAGGAAGCAAGAAAAGAAATCGCACAGAAATTCAACATCTGACTATATAACTAATTAGAAGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1964#0 GACCGGATCTAATCATGCTCACGCCGACTATGTTTCCTGTGCTCTCGTTCCTTCTCCTTC 60 consensus_1964#1 ------------------------------------------------------------ consensus_1964#0 TTAACGACGTGAGCCAGAAGATCGAACGTTAAAAATTTGAAAAACCGTTTAAAAAATTGA 120 consensus_1964#1 ------------------------------------------------------------ consensus_1964#0 AAATTAAAATTCAAGATCGTTTAAAGGGAAACAAAACAAGAGGAAACGAATCGGCCAGGA 180 consensus_1964#1 ------------------------------AGAGAACTCGAGTAAAATATTCTTTAAATA 30 * * *** *** *** * ** * * consensus_1964#0 AAAGAAATATTAATCGATGATACTGCTCTCATTGTGCTCTTTGAGAATAAATTCTTGGAG 240 consensus_1964#1 AAAAAGATATTAG-----GATATTA-----ATCATGCCTTTAAAGAGGATAGTCCC---- 76 *** * ****** **** * ** *** ** *** * * ** consensus_1964#0 GTAAAAACGAATCGTATGGAATAATCGAGAAAAATATTTGCATAATGATTTTATTAACAT 300 consensus_1964#1 -------TGCTTCCTATGTT-TCATCGCAAAATA-ATTCACCTAAACTATTCTGAAGCAT 127 * ** **** * **** *** * *** * *** ** * *** consensus_1964#0 CTCCCTTGCGGAGAAACGTTTAATTTTGTAGATAAGAAGCTGAAATGATAAACGAGATAG 360 consensus_1964#1 GAGC----TGAAAGTATAGCTAGAAATGTAGACTGGTTATTGAAT--GCCGTCGCCATGG 181 * * * * ** ****** * **** ** ** * consensus_1964#0 TTAGAGATGG-ATGGAAAAAGTATTTATGTACGAATATTTGATTCAATGGTTAATTAATG 419 consensus_1964#1 T-GGAGCTGGTGTGTAGCAACTCCCTAAGTCCAGGAACCT-ATTCATGTGTTGAAAAATT 239 * *** *** ** * ** * ** ** * * * ***** *** * *** consensus_1964#0 ---AAACGTGATCAAGAAAGAAAGTGGGGCCAAGTATTTATCCGAGTACAATAATTCTTT 476 consensus_1964#1 CGCAAAAGGAATCGAGGAAGCAAGAAAAG--AAAT-CGCACAGAAATTCAACATCTGACT 296 *** * *** ** *** *** * ** * * * * *** * * * consensus_1964#0 TTATTTATTAAGAGAACTCGAGTAAAATATTCTTTAAATAAAAAAGATATTAGGATAT 534 consensus_1964#1 ATATAACTAATTAGAAGAAAAAAAA--------------------------------- 321 *** * * **** * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |