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Apis mellifera
cluster # 1966 cluster # 1966       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1966#0 length = 611 sequences # 1  
consensus_1966#1 length = 429 sequences # 1  

consensusID : consensus_1966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [CTTGCCTAGCTGGCTGACGTTGAGAACTCTTCGGCGTCGTTTGCGACGACAGCCAGTCGAAAAGGGAGTGTCCATCATCATCGATCGCTGTTTTCTCATTGGATTAGAAAGACTATCCAGGCGACGATTAATTAATGCCATACATTGTAATACACTAACGATACCATTACACGCGTAATAAGACATAACCGCCGTGGCCTATACCGTACACTGATAAATACATACACATACATACACGCGCGTATACATACACATACCACATATAAATATATACATACGATATGTATATGTACATCAGACAGATATATACACAGGTTCGTACACAGAAAAGTCGATATATGGTGCTAGGACGATCACACCCTGGTGCTTAATTCTGTATACACACAGAGCCATGTGCGTAAATTCGCACGGATCGCCTGCAGCCTTCGTCGAGGAGTCTAGATACGTCCTGACGCGTCGTGAACAGAACATAGATGGTCGAAACATATTTCCATTGTGTGATATCCGATACGAAGTAATGAAATTAATTAATAGTAGCATCAATATCGTTCCTGGGATTCTCCAAGGATTCTCCAAGACGATTATTAAAGGGAATATCATATAATATTAAC]

[+] EMBL BI509600             [CTTGCCTAGCTGGCTGACGTTGAGAACTCTTCGGCGTCGTTTGCGACGACAGCCAGTCGAAAAGGGAGTGTCCATCATCATCGATCGCTGTTTTCTCATTGGATTAGAAAGACTATCCAGGCGACGATTAATTAATGCCATACATTGTAATACACTAACGATACCATTACACGCGTAATAAGACATAACCGCCGTGGCCTATACCGTACACTGATAAATACATACACATACATACACGCGCGTATACATACACATACCACATATAAATATATACATACGATATGTATATGTACATCAGACAGATATATACACAGGTTCGTACACAGAAAAGTCGATATATGGTGCTAGGACGATCACACCCTGGTGCTTAATTCTGTATACACACAGAGCCATGTGCGTAAATTCGCACGGATCGCCTGCAGCCTTCGTCGAGGAGTCTAGATACGTCCTGACGCGTCGTGAACAGAACATAGATGGTCGAAACATATTTCCATTGTGTGATATCCGATACGAAGTAATGAAATTAATTAATAGTAGCATCAATATCGTTCCTGGGATTCTCCAAGGATTCTCCAAGACGATTATTAAAGGGAATATCATATAATATTAAC]


>consensus_1966#0 CTTGCCTAGCTGGCTGACGTTGAGAACTCTTCGGCGTCGTTTGCGACGACAGCCAGTCGA AAAGGGAGTGTCCATCATCATCGATCGCTGTTTTCTCATTGGATTAGAAAGACTATCCAG GCGACGATTAATTAATGCCATACATTGTAATACACTAACGATACCATTACACGCGTAATA AGACATAACCGCCGTGGCCTATACCGTACACTGATAAATACATACACATACATACACGCG CGTATACATACACATACCACATATAAATATATACATACGATATGTATATGTACATCAGAC AGATATATACACAGGTTCGTACACAGAAAAGTCGATATATGGTGCTAGGACGATCACACC CTGGTGCTTAATTCTGTATACACACAGAGCCATGTGCGTAAATTCGCACGGATCGCCTGC AGCCTTCGTCGAGGAGTCTAGATACGTCCTGACGCGTCGTGAACAGAACATAGATGGTCG AAACATATTTCCATTGTGTGATATCCGATACGAAGTAATGAAATTAATTAATAGTAGCAT CAATATCGTTCCTGGGATTCTCCAAGGATTCTCCAAGACGATTATTAAAGGGAATATCAT ATAATATTAAC



consensusID : consensus_1966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence
                              [AACTTCGATTTAAGTATAGCTGCTCTTTTGAGTTCAATTAGTGGACGTTGAGGACGAGATCGCGCGCGGATCGCCATTCCTCTTCGCGAAGTGCGTATCGTCGAGTTTTATTTTATTATTTTTTTTTTTTCTTCTTCTTCTTCTTCTCTCTTAATAATCTCTCCGTTCCACACCCCAAGTGAATTATTGGCTCCCTTCGCTCTTTGCTCGTCGGCCACTCTCTATTTTACAATAGTATTATGGTACATATTATTAACGGGAGATCAGTGGCGCGCAGTGGCCTACGTGCGATGATACGAAGGAACCGATATTTATCCCGATCTCTAAAATGCAGGTACATTTGTTTTTTGCATCGTGCGTCAGAGCATAGTACGCATTTTCATTTTCACAAACTATATCTCCATCGGTTAATATTATATGATATTCCCT]

[+] EMBL BI504485             [AACTTCGATTTAAGTATAGCTGCTCTTTTGAGTTCAATTAGTGGACGTTGAGGACGAGATCGCGCGCGGATCGCCATTCCTCTTCGCGAAGTGCGTATCGTCGAGTTTTATTTTATTATTTTTTTTTTTTCTTCTTCTTCTTCTTCTCTCTTAATAATCTCTCCGTTCCACACCCCAAGTGAATTATTGGCTCCCTTCGCTCTTTGCTCGTCGGCCACTCTCTATTTTACAATAGTATTATGGTACATATTATTAACGGGAGATCAGTGGCGCGCAGTGGCCTACGTGCGATGATACGAAGGAACCGATATTTATCCCGATCTCTAAAATGCAGGTACATTTGTTTTTTGCATCGTGCGTCAGAGCATAGTACGCATTTTCATTTTCACAAACTATATCTCCATCGGTTAATATTATATGATATTCCCT]


>consensus_1966#1 AACTTCGATTTAAGTATAGCTGCTCTTTTGAGTTCAATTAGTGGACGTTGAGGACGAGAT CGCGCGCGGATCGCCATTCCTCTTCGCGAAGTGCGTATCGTCGAGTTTTATTTTATTATT TTTTTTTTTTCTTCTTCTTCTTCTTCTCTCTTAATAATCTCTCCGTTCCACACCCCAAGT GAATTATTGGCTCCCTTCGCTCTTTGCTCGTCGGCCACTCTCTATTTTACAATAGTATTA TGGTACATATTATTAACGGGAGATCAGTGGCGCGCAGTGGCCTACGTGCGATGATACGAA GGAACCGATATTTATCCCGATCTCTAAAATGCAGGTACATTTGTTTTTTGCATCGTGCGT CAGAGCATAGTACGCATTTTCATTTTCACAAACTATATCTCCATCGGTTAATATTATATG ATATTCCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1966#0      CTTGCCTAGCTGGCTGACGTTGAGAACTCTTCGGCGTCGTTTGCGACGACAGCCAGTCGA 60
consensus_1966#1      ---------------AACTTCGATTTAAGTATAGCTGCTCTTTTGAGTTCAATTAGTGGA 45
                                      ** * **      *   **  *  **  **   **   *** **

consensus_1966#0      AAAGGGAGTGTCCATCAT-CATCGATCGCTGTTTTCTCATTGGATTAGAAAGACTATCCA 119
consensus_1966#1      CGTTGAGGACGAGATCGCGCGCGGATCGCCATTC-CTCTTCG---CGAAGTGCGTATC-- 99
                          *  *     ***   *   ******  **  *** * *      *  *  ****  

consensus_1966#0      GGCGACGATTAATTAATGCCATACATTGTAATACACTAACGATACCATTACACGCGTAAT 179
consensus_1966#1      GTCGAGTTTTATTTTAT----TATTTTTTTTTTTTCTTCTTCTTCTTCTTCTCTCTTAAT 155
                      * ***   *** ** **    **  ** *  *   **     * *   * * * * ****

consensus_1966#0      AAGACATAACCGCCGTGGCCTATACCGTACACTGATAAATACATACACATACATACACGC 239
consensus_1966#1      AA-------TCTCTCCGTTCCACACCCCAAGTGAATTATTGGCTCCCTTCGC-TCTTTGC 207
                      **        * *   *  * * ***  *     ** * *   * *     * *    **

consensus_1966#0      GCGTATACATACACATACCACATATAAATATATACATACGATATGTATATGTACATCAGA 299
consensus_1966#1      TCGTCGGC-----CACTCTCTATTTTACAATAGTATTATGGTACATAT-----TATTAAC 257
                       ***   *     **  *   ** * *  ***    ** * **  ***      ** *  

consensus_1966#0      CAGATATATACACAGGTTCGTACACAGAAAAGTCGATATATGGTGCTAGGACGATCACAC 359
consensus_1966#1      GGGAGAT-----CAG--TGGCGCGCAGTG--GCCTACGTGCGATGATACGAAG-----GA 303
                        ** **     ***  * *  * ***    * * *  *  * ** ** ** *       

consensus_1966#0      CCTGGTGCTTAATTCTGTATACACACAGAGCCATGTGCGTAAATTCGCACGGATCGCCTG 419
consensus_1966#1      ACCGATATTTATCCCGATCTCTAAA-------ATGCAGGTACATTTG------TTTTTTG 350
                       * * *  ***   *  * *  * *       ***   *** *** *      *    **

consensus_1966#0      CAGCCTTCGTCGAGGAGTCTAGATACGTCCTGACGCGTCGTGAACAGAACATAGATGGTC 479
consensus_1966#1      CATCGTGCGTCA--GAGCATAG-TACGCATTTTCATTTTC---ACAAACTATA-----TC 399
                      ** * * ****   ***  *** ****   *  *   *     *** *  ***     **

consensus_1966#0      GAAACATATTTCCATTGTGTGATATCCGATACGAAGTAATGAAATTAATTAATAGTAGCA 539
consensus_1966#1      TCCATCGGTTAATATTATATGATATTCCCT------------------------------ 429
                         *    **   *** * ****** *  *                              

consensus_1966#0      TCAATATCGTTCCTGGGATTCTCCAAGGATTCTCCAAGACGATTATTAAAGGGAATATCA 599
consensus_1966#1      ------------------------------------------------------------
                                                                                  

consensus_1966#0      TATAATATTAAC 611
consensus_1966#1      ------------
                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)