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Apis mellifera
cluster # 214 cluster # 214       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_214#0 length = 611 sequences # 2  
consensus_214#1 length = 603 sequences # 2  
consensus_214#2 length = 217 sequences # 2  

consensusID : consensus_214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 611
fasta sequence
                              [GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA]

[+] EMBL BI508974             [GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATTGGTTATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAA                                                                                                                                                                                                                                     ]
[-] EMBL BI509539             [                                       AACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA]


>consensus_214#0 GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAAC AAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCC ATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGT ATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAA GATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCG GCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGC CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA GAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAA CGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAA GCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGT TGAACTTATTA



consensusID : consensus_214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence
                              [TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT]

[+] EMBL BI504653             [TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAATACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAAAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAA                                                                             ]
[+] EMBL BI510156             [                       CACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATTATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT]


>consensus_214#1 TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATAC AATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTC ATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATA GTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGAT AGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTT ACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTG ATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCA TCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAA AACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCT CCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAAT AAT



consensusID : consensus_214#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 217
fasta sequence
                              [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]

[-] EMBL BI506256             [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]
[-] EMBL BI509574             [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]


>consensus_214#2 TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACA AGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAA ACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACC AACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_214#0      GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAAC 60
consensus_214#2      ------------------------------------------------------------
consensus_214#1      --------------------------------------------------------TCTC 4
                                                                                 

consensus_214#0      AAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCC 120
consensus_214#2      ------------------------------------------------------------
consensus_214#1      AGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATG 64
                                                                                 

consensus_214#0      ATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGT 180
consensus_214#2      ------------------------------------------------------------
consensus_214#1      ATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTC 124
                                                                                 

consensus_214#0      ATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAA 240
consensus_214#2      ------------------------------------------------------------
consensus_214#1      GTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTC 184
                                                                                 

consensus_214#0      GATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCG 300
consensus_214#2      ------------------------------------------------------------
consensus_214#1      CAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGAC 244
                                                                                 

consensus_214#0      GCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGC 360
consensus_214#2      ----------------------------TTTTTCATGCTTATA---CTGACTGTCTAAGC 29
consensus_214#1      CACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAG 304
                                                    *  *     * *     **   * **   

consensus_214#0      CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 420
consensus_214#2      CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 89
consensus_214#1      GAACAAATTTAATTATGTTAAATG-TGAAAACACCCACACAAATGGCAGGAGTAGTGATA 363
                      ** ** * ***  ***  ***   * ** *   *** *   ***      *** *  **

consensus_214#0      GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 471
consensus_214#2      GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 140
consensus_214#1      GTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCA 423
                     *  *  ** *      *  *  *** **** *    * ** * **   ** *  **   *

consensus_214#0      CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AATATA 527
consensus_214#2      CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AAAAAA 196
consensus_214#1      TAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAAC 483
                      *    * *    *      **  ******  *  **  **  ** ****    ** *  

consensus_214#0      ACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTA 587
consensus_214#2      AAAAAGCAACGGGCCGCAACA--------------------------------------- 217
consensus_214#1      AAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCT 543
                     * **  * *           *                                       

consensus_214#0      TAAACATTATTGTTGAACTTATTA------------------------------------ 611
consensus_214#2      ------------------------------------------------------------
consensus_214#1      TCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT 603
                                                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)