These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA] [+] EMBL BI508974 [GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATTGGTTATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAA ] [-] EMBL BI509539 [ AACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA] consensusID : consensus_214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT] [+] EMBL BI504653 [TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAATACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAAAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAA ] [+] EMBL BI510156 [ CACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATTATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT] consensusID : consensus_214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 217 fasta sequence [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA] [-] EMBL BI506256 [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA] [-] EMBL BI509574 [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_214#0 GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAAC 60 consensus_214#2 ------------------------------------------------------------ consensus_214#1 --------------------------------------------------------TCTC 4 consensus_214#0 AAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCC 120 consensus_214#2 ------------------------------------------------------------ consensus_214#1 AGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATG 64 consensus_214#0 ATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGT 180 consensus_214#2 ------------------------------------------------------------ consensus_214#1 ATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTC 124 consensus_214#0 ATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAA 240 consensus_214#2 ------------------------------------------------------------ consensus_214#1 GTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTC 184 consensus_214#0 GATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCG 300 consensus_214#2 ------------------------------------------------------------ consensus_214#1 CAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGAC 244 consensus_214#0 GCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGC 360 consensus_214#2 ----------------------------TTTTTCATGCTTATA---CTGACTGTCTAAGC 29 consensus_214#1 CACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAG 304 * * * * ** * ** consensus_214#0 CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 420 consensus_214#2 CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 89 consensus_214#1 GAACAAATTTAATTATGTTAAATG-TGAAAACACCCACACAAATGGCAGGAGTAGTGATA 363 ** ** * *** *** *** * ** * *** * *** *** * ** consensus_214#0 GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 471 consensus_214#2 GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 140 consensus_214#1 GTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCA 423 * * ** * * * *** **** * * ** * ** ** * ** * consensus_214#0 CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AATATA 527 consensus_214#2 CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AAAAAA 196 consensus_214#1 TAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAAC 483 * * * * ** ****** * ** ** ** **** ** * consensus_214#0 ACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTA 587 consensus_214#2 AAAAAGCAACGGGCCGCAACA--------------------------------------- 217 consensus_214#1 AAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCT 543 * ** * * * consensus_214#0 TAAACATTATTGTTGAACTTATTA------------------------------------ 611 consensus_214#2 ------------------------------------------------------------ consensus_214#1 TCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT 603 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |