These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTTCTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGATTGTCAAAAAAAAAA] [+] EMBL BI508595 [TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTTCTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGATTGTCAAAAAAAAAA] consensusID : consensus_2204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTCGAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAAAATGAAAAATTCCATCTTTTAAAACC] [+] EMBL BI516842 [CCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTCGAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAAAATGAAAAATTCCATCTTTTAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2204#0 TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTT 60 consensus_2204#1 ------------------------------------------------------------ consensus_2204#0 CTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCT 120 consensus_2204#1 --------------------------------------------------------CCCT 4 **** consensus_2204#0 TGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTC 180 consensus_2204#1 TGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTC 64 ************************************************************ consensus_2204#0 GGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCG 240 consensus_2204#1 GGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCG 124 ************************************************************ consensus_2204#0 GACAATCGACACGCCAGAAGTTTCGA-----------TTGTCAAAAAAAAAA-------- 281 consensus_2204#1 GACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTC 184 ************************** ** ** ** consensus_2204#0 ------------------------------------------------------------ consensus_2204#1 GAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAA 244 consensus_2204#0 -------------------------- consensus_2204#1 AATGAAAAATTCCATCTTTTAAAACC 270 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |