These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [GACATACTACATCCTGATTTGACCGAAACTTCCGTTTCCGAACGGAAGTCCGCTGAAAGAAGCGTCTCCTTCAATCGAGACGTCCACGTCAAGAGGATCGGACGTGAAGCATCCCGCGTGACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCCACTCCGATCCATAAGGAGAGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAAGCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACTTTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGTGAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCATTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTCTTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCTAATTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAGAGTAATCGAGTGAAGAAGCAAT] [+] EMBL BI503794 [GACATACTACATCCTGATTTGACCGAAACTTCCGTTTCCGAACGGAAGTCCGCTGAAAGAAGCGTCTCCTTCAATCGAGACGTCCACGTCAAGAGGATCGGACGTGAAGCATCCCGCGTGACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCCACTCCGATCCATAAGGAGAGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAAGCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACTTTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGTGAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCATTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTCTTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCTAATTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAGAGTAATCGAGTGAAGAAGCAAT] consensusID : consensus_2227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [GATCCCAGCTTTTATTAGTTCTTCGGCGCTCGGCGAAGAATGATGTGTGTCAGAATAATGGACGTGAAGCATCCCGCGTGACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCTACTCCGATCCATAAGGAGAGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAAGCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACTTTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGTGAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCATTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTCTTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCTNNTTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAGAGTAATCGAGTGAAGAAGCAATTATCCC] [+] EMBL BI506990 [GATCCCAGCTTTTATTAGTTCTTCGGCGCTCGGCGAAGAATGATGTGTGTCAGAATAATGGACGTGAAGCATCCCGCGTGACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCTACTCCGATCCATAAGGAGAGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAAGCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACTTTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGTGAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCATTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTCTTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCTNNTTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAGAGTAATCGAGTGAAGAAGCAATTATCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2227#0 GACATACTACATCCTGATTTGACCGAAACTTCCGTTTCCGAACGGAAGTCCGCTGAAAGA 60 consensus_2227#1 ---------------------------------------GATCCCAGCTTTTATTAGTTC 21 ** * * * * * consensus_2227#0 AGCGTCTCCTTCAATCGAGACGTCCACGTCAAGAGGATCGGACGTGAAGCATCCCGCGTG 120 consensus_2227#1 TTCGGCGCTCGGCGAAGAATGATGTGTGTCAGAATAAT-GGACGTGAAGCATCCCGCGTG 80 ** * * ** * **** * ** ********************* consensus_2227#0 ACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCCACTCCGATCCATAAGGAG 180 consensus_2227#1 ACCGCGGCTCTGATAGGAGATGGCGAAGGCAGGTTGATTGCTACTCCGATCCATAAGGAG 140 ***************************************** ****************** consensus_2227#0 AGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAA 240 consensus_2227#1 AGCATAGCTTTGAAGAGCAAAGAGGATCTAGCTCAGGAGGCGGCGCTAGTACTTCAACAA 200 ************************************************************ consensus_2227#0 GCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACT 300 consensus_2227#1 GCGGGCAGCCTTCATTGCGTTGCTCATGACAACAGACGATTGCCAGGTCGTTTCAGCACT 260 ************************************************************ consensus_2227#0 TTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGT 360 consensus_2227#1 TTGCCAGTGCGTCGTAACAAAAAAAGGCCAGAACTACCGCTTGATGTAAGACGAAAAAGT 320 ************************************************************ consensus_2227#0 GAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCA 420 consensus_2227#1 GAAGAAATAGTCACGAACAACACAGATCTTATCGACACACCGAAAATAAAGAAAAAAGCA 380 ************************************************************ consensus_2227#0 TTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTC 480 consensus_2227#1 TTAGAAAGAAGTATCAGCGATGCAAACATAAAAAAGTTAAAAAGTCCATTGGCCAAATTC 440 ************************************************************ consensus_2227#0 TTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCT 540 consensus_2227#1 TTTTCTCCAAAGTTAGAAAGGAAGCATAAGCCGGTTAGTCGTAGCATCAGTGACGCGGCT 500 ************************************************************ consensus_2227#0 AATTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAG 600 consensus_2227#1 NNTTTGTTACGGTCCCATCGCAAAAGGAGCGGTAGCGAAAGTGAAGGATCGCATTTGGAG 560 ********************************************************** consensus_2227#0 AGTAATCGAGTGAAGAAGCAAT------ 622 consensus_2227#1 AGTAATCGAGTGAAGAAGCAATTATCCC 588 ********************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |