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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 608 fasta sequence
[GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC-TTTCCTTTTC-TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAG-A-A-ATATATATATATATATGCGATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGACCTCGAGTTGTCC]
[+] EMBL BI511401 [GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCT ]
[+] EMBL BI505786 [ CAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAGTATATATATATATATATATATGCGATGGTTACTCTG ]
[+] EMBL BI517143 [ AAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTCTTTTTTTATTTTTCCCTCTCTCTCACGATGNNCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTC ]
[+] EMBL BI508960 [ GCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCCTTTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAG TATATATATATATATGCGATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGACCTCGAGTTGTCC]
consensusID : consensus_226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[TTTCTAACACCAAGCCAAGTTTTTTTTATTCATCATTTAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATTTTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTAATATACGCGAACAAGTTATATACAAGATTGTCTTTAGAATATTTGTGTTACCGTTCTGTTCTAGTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACTGTTATTATCAACACTGTCTGCGTTTAATCGTAAGTTACAACGTCTGCATACTTCTCGTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTGGCGGCCACTGTTTGTGCATACACAGAGTAACCATCGCATATATA]
[+] EMBL BI502998 [TTTCTAACACCAAGCCAAGTTTTTTTTATTCATCATTTAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATTTTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTAATATACGCGAACAAGTTATATACAAGATTGTCTTTAGAATATTTGTGTTACCGTTCTGTTCTAGTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACTGTTATTATCAACACTGTCTGCGTTTAATCGTAAGTTACAACGTCTGCATACTTCTCGTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTGGCGGCCACTGTTTGTGCATACACAGAGTAACCATCGCATATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_226#0 GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTAT 60
consensus_226#1 ------------------------------------------------------------
consensus_226#0 GCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCCTTTC 120
consensus_226#1 ------------------------------------------------------------
consensus_226#0 CTTTTCTTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTG 180
consensus_226#1 ---------------------TTTCTAACACCA-AGCCAAGTTTTTTTTATTCATCATT- 37
* *** *** * * ** * **** * **** **
consensus_226#0 CATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATT 240
consensus_226#1 TAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATT 97
* ****** * * *** * * * ** *** * ****
consensus_226#0 CCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTT-CTTTTCTCTTGCTTCTTTTCCTTC 299
consensus_226#1 TTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTA 157
* ** * ** * ** * **** ***** **** ***** * **
consensus_226#0 TTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCT 359
consensus_226#1 ATATACGCGAACAAG-TTATATACAAG-ATTGTCTTTAGAATATTTGTGTTACCGTTCTG 215
* * * * ** * * * * ** *** * ** * * * * *
consensus_226#0 CTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCT 419
consensus_226#1 TTCTA--GTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACT 273
* ** ** * ** * * ** * ** * * **
consensus_226#0 CTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTC 479
consensus_226#1 GTTATTATCAACAC---TGTCTGCGTTTAATCGTAAG-TTACAACGTCTGCATACTTCTC 329
* ** ** * * * *** * * ** ** ** * * ****
consensus_226#0 AGGTCTCTGCTATGCAATGCTTGGCCAATACACAA--GAAATATATATATATATATGC-G 536
consensus_226#1 --GTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTG 387
** * ** * * * * ** *** * * ** *** ** *
consensus_226#0 ATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGAC 596
consensus_226#1 GCGGCCACTGTTTGTGCATACACAGAGTAACCATC-GCATAT-ATA-------------- 431
** *** * *** ***** *** ** * ** *** *
consensus_226#0 CTCGAGTTGTCC 608
consensus_226#1 ------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |