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Apis mellifera
cluster # 2341 cluster # 2341       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2341#0 length = 646 sequences # 1  
consensus_2341#1 length = 469 sequences # 1  

consensusID : consensus_2341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence
                              [CAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACGGAGAATTGACGTACGATGTGATTAAAAATATGAAATATTTGGACAAGGTTCTCAAAGAAACTTTAAGGAAGTATCCAATAATGGCAATGCTAACCAGAGAAGCGCAGGAAAATTACACGTTTAAGGGCACTAAAGTTACTATCGAGAAGGGTATAAAAGTGTGGATACTGCCGTATGGAATTCAAAATGATCCGGATATATTTCCAAATCCTGATATTTTCGACCCCGAAAGATTCGATGAGGAGGCTGTAGCTGCCAGGCATCCAATGAGTTATTTACCTTTTGGCGATGGACCAAGAAACTGCATTGGTGCACGTTTTGCACAATTTCAAAGCAAAATTGGTATTATAACAATTGTTCGTAATCACAAAATTGATGTTTGCGAGCAAACTAAGATTCCATACGAAAGTGATCCATTTCAATTTTTGTTAGCACTGAAAGGAGGTATCAATCTAAAAAATAAGTAAAATATAAAATTAATATGAGTATTATGTATGTATATATGCATATTAACAAAAGTTAATATGTAAAAGTTATTCAACATATATTAGTTAAAAGTTTGTAAAGTTTAAAAGATAATTATGAGATTATAAAATTTAT]

[+] EMBL BI503528             [CAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACGGAGAATTGACGTACGATGTGATTAAAAATATGAAATATTTGGACAAGGTTCTCAAAGAAACTTTAAGGAAGTATCCAATAATGGCAATGCTAACCAGAGAAGCGCAGGAAAATTACACGTTTAAGGGCACTAAAGTTACTATCGAGAAGGGTATAAAAGTGTGGATACTGCCGTATGGAATTCAAAATGATCCGGATATATTTCCAAATCCTGATATTTTCGACCCCGAAAGATTCGATGAGGAGGCTGTAGCTGCCAGGCATCCAATGAGTTATTTACCTTTTGGCGATGGACCAAGAAACTGCATTGGTGCACGTTTTGCACAATTTCAAAGCAAAATTGGTATTATAACAATTGTTCGTAATCACAAAATTGATGTTTGCGAGCAAACTAAGATTCCATACGAAAGTGATCCATTTCAATTTTTGTTAGCACTGAAAGGAGGTATCAATCTAAAAAATAAGTAAAATATAAAATTAATATGAGTATTATGTATGTATATATGCATATTAACAAAAGTTAATATGTAAAAGTTATTCAACATATATTAGTTAAAAGTTTGTAAAGTTTAAAAGATAATTATGAGATTATAAAATTTAT]


>consensus_2341#0 CAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACGGAGAATTGACGTAC GATGTGATTAAAAATATGAAATATTTGGACAAGGTTCTCAAAGAAACTTTAAGGAAGTAT CCAATAATGGCAATGCTAACCAGAGAAGCGCAGGAAAATTACACGTTTAAGGGCACTAAA GTTACTATCGAGAAGGGTATAAAAGTGTGGATACTGCCGTATGGAATTCAAAATGATCCG GATATATTTCCAAATCCTGATATTTTCGACCCCGAAAGATTCGATGAGGAGGCTGTAGCT GCCAGGCATCCAATGAGTTATTTACCTTTTGGCGATGGACCAAGAAACTGCATTGGTGCA CGTTTTGCACAATTTCAAAGCAAAATTGGTATTATAACAATTGTTCGTAATCACAAAATT GATGTTTGCGAGCAAACTAAGATTCCATACGAAAGTGATCCATTTCAATTTTTGTTAGCA CTGAAAGGAGGTATCAATCTAAAAAATAAGTAAAATATAAAATTAATATGAGTATTATGT ATGTATATATGCATATTAACAAAAGTTAATATGTAAAAGTTATTCAACATATATTAGTTA AAAGTTTGTAAAGTTTAAAAGATAATTATGAGATTATAAAATTTAT



consensusID : consensus_2341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence
                              [TTCCATATCGGACAAGGACAGCGAGTTTCGTATAATCGGCAGAAAATTATTCACGCCCACGTTTAAAACAATAGTCAGAGATGTCTGCAGGCAATTTTTGCCAGGATTGTACGATGTGATCGGTCACAAGCTTCAAATCGAAGAAGTAAATGAATTTCTCACGAATCTGATCAAGGACACGATAAATTACAGAAAAGAGAACAAAATAGTTAGACCCGATTTTGTCAACACATTGATAGAGCTTAAAGATCATCCAGAGAAATTAGAAACTATAAAGCTGACAGATTCGATGATTGCTTCGCAAGCTTTTGTCTTTTTTGTTGCTGGTTTCGAAACTTCTTCATCCACGATATCTCATGCCCTTTACGAGCTGGCGCAGAATCAGGAAATCCAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACAGAGAATTGACGTACGATGTGATTAAAAATATG]

[+] EMBL BI509645             [TTCCATATCGGACAAGGACAGCGAGTTTCGTATAATCGGCAGAAAATTATTCACGCCCACGTTTAAAACAATAGTCAGAGATGTCTGCAGGCAATTTTTGCCAGGATTGTACGATGTGATCGGTCACAAGCTTCAAATCGAAGAAGTAAATGAATTTCTCACGAATCTGATCAAGGACACGATAAATTACAGAAAAGAGAACAAAATAGTTAGACCCGATTTTGTCAACACATTGATAGAGCTTAAAGATCATCCAGAGAAATTAGAAACTATAAAGCTGACAGATTCGATGATTGCTTCGCAAGCTTTTGTCTTTTTTGTTGCTGGTTTCGAAACTTCTTCATCCACGATATCTCATGCCCTTTACGAGCTGGCGCAGAATCAGGAAATCCAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACAGAGAATTGACGTACGATGTGATTAAAAATATG]


>consensus_2341#1 TTCCATATCGGACAAGGACAGCGAGTTTCGTATAATCGGCAGAAAATTATTCACGCCCAC GTTTAAAACAATAGTCAGAGATGTCTGCAGGCAATTTTTGCCAGGATTGTACGATGTGAT CGGTCACAAGCTTCAAATCGAAGAAGTAAATGAATTTCTCACGAATCTGATCAAGGACAC GATAAATTACAGAAAAGAGAACAAAATAGTTAGACCCGATTTTGTCAACACATTGATAGA GCTTAAAGATCATCCAGAGAAATTAGAAACTATAAAGCTGACAGATTCGATGATTGCTTC GCAAGCTTTTGTCTTTTTTGTTGCTGGTTTCGAAACTTCTTCATCCACGATATCTCATGC CCTTTACGAGCTGGCGCAGAATCAGGAAATCCAAGACAAGCTTCGCGAGGAAATCAGAGA AGTTTATGAAAAACACAGAGAATTGACGTACGATGTGATTAAAAATATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2341#0      CAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACGGAGAATTG-----A 55
consensus_2341#1      ----TTCCATATCG-GACAAGGACAGCGAGTTTCGTATAATCGGCAGAAAATTATTCACG 55
                                 *** **  *   *** **  **  *  **    * ** ****       

consensus_2341#0      CGTACGATGTGATTAAAAATATGAAATATTTGGACAAGGTTCTCAAAGAAACTTTAAGGA 115
consensus_2341#1      CCCACGTTTAAAACAATAGTCAGAGATGTCTGCAGGCAATTTTTGCCAGGATTGTACGAT 115
                      *  *** *   *  ** * *  ** ** * ** *     ** *       * * ** *  

consensus_2341#0      AGTATCCAATAATGGCAATGCTAACCAGAGAAGCGCAGGAAAATTACACGTTTAAGGGCA 175
consensus_2341#1      GTGATCGGTCACAAGC--TTCAAATCGAAGAAGTAAATGAATTTCTCACGAATCTG---A 170
                         ***    *   **  * * ** *  *****   * ***  *  ****  *  *   *

consensus_2341#0      CTAAAGTTACTATCGAGAAGGGTATAAAAGTGTGGATACTGCCGTATGGAATTCAAAATG 235
consensus_2341#1      TCAAGGACACGAT-----AAATTACAGAAAAGAGAACAAAATAGTTAG--ACCCGATTTT 223
                        ** *  ** **     *   ** * **  * * * *     **  *  *  * *  * 

consensus_2341#0      ATCCGGATATATTTCCAAATCCTGATATTTTCGACCCCGAAAGATTCGATGAGGAGGCTG 295
consensus_2341#1      GTC--AACACATTGATAGAGCTTAAAGATC---ATCCAGAGAAATTAGA----AACTATA 274
                       **   * * ***   * * * * *   *    * ** ** * *** **     *   * 

consensus_2341#0      TAGCTGCCAGGCATCCAATGAGTTATTTACCTTTTGGCGATGGACCAAGAAACTGCATTG 355
consensus_2341#1      AAGCTGACAG--ATTCGATGATTGCTTCGC------------AAGCTTTTGTCTTTTTTG 320
                       ***** ***  ** * **** *  **  *             * *      **   ***

consensus_2341#0      GTGCACGTTTTGCACAATTTCAAAGCAAAATTGGTATTATAACAATTGTTCGTAATCACA 415
consensus_2341#1      TTGCTGGTTTCGAAACTTCTTCATCCACGAT--ATCTCATGCCCTTTACGAGCTGGCGCA 378
                       ***  **** * *   * *  *  **  **   * * **  *  **    *    * **

consensus_2341#0      AAATTGATGTTTGCGAG-CAAACTAAGATTCCATACGAAAGTGATCCATTTCAATTTTTG 474
consensus_2341#1      GAATCAGGAAATCCAAGACAAGCTTCGCGAGGAAATCAGAGAAGTTTATGAAAAACACAG 438
                       ***       * * ** *** **  *     * *  * **   *  **   **     *

consensus_2341#0      TTAGCACTGAAAGGAGGTATCAATCTAAAAAATAAGTAAAATATAAAATTAATATGAGTA 534
consensus_2341#1      --AGAATTGACGTACGATGT-GATTAAAAATATG-------------------------- 469
                        ** * ***     * * *  **  **** **                           

consensus_2341#0      TTATGTATGTATATATGCATATTAACAAAAGTTAATATGTAAAAGTTATTCAACATATAT 594
consensus_2341#1      ------------------------------------------------------------
                                                                                  

consensus_2341#0      TAGTTAAAAGTTTGTAAAGTTTAAAAGATAATTATGAGATTATAAAATTTAT 646
consensus_2341#1      ----------------------------------------------------
                                                                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)