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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2398 cluster # 2398       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2398#0 length = 605 sequences # 1  
consensus_2398#1 length = 329 sequences # 1  

consensusID : consensus_2398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence
                              [TACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTGAATTGTATTATGTACCAATGGCAACAACAGAAGGATGTTTAGTAGCATCTACAAATCGTGGTAGTAGAGCATTGTTAAAATGTGGTGTAACAAGCCGTGTAGTTGCTGATGGAATGACTAGAGGACCAGTTGTGAGATTTCCAAATATTGTTAGAGCAAGTGAAGCTATGGCATGGATGCAAGATCCTGATAATTTTAAAGAAATGAAAAATAGTTTTAATTTAACCAGTAGATTTGCACGTTTGACAAAGATTAATATACGTATTGCTGGCAGGCATTTGTTTATTCGTTTTGTAGCAACTACTGGTGACGCTATGGGAATGAATATGTTATCTAAAGGAACTGAAAAATCATTAAATACAGTGAAAGAACATTTTCCTGATATGGAAATATTATCATTAAGCGGTAATTTTTGCACGGATAAAAAGCCAGCAGCAGTAAATTGGGTTTGTGGTAGAGGCAAAAGTGTGGTTTGCGAAGCAGTTGTACCTGCAGATATTGTTACAAATGTGTTAAAAACATCTGTTCATGCTTTAGNTGATGTGAATATAAGTAAAAATATGATT]

[+] EMBL BI503396             [TACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTGAATTGTATTATGTACCAATGGCAACAACAGAAGGATGTTTAGTAGCATCTACAAATCGTGGTAGTAGAGCATTGTTAAAATGTGGTGTAACAAGCCGTGTAGTTGCTGATGGAATGACTAGAGGACCAGTTGTGAGATTTCCAAATATTGTTAGAGCAAGTGAAGCTATGGCATGGATGCAAGATCCTGATAATTTTAAAGAAATGAAAAATAGTTTTAATTTAACCAGTAGATTTGCACGTTTGACAAAGATTAATATACGTATTGCTGGCAGGCATTTGTTTATTCGTTTTGTAGCAACTACTGGTGACGCTATGGGAATGAATATGTTATCTAAAGGAACTGAAAAATCATTAAATACAGTGAAAGAACATTTTCCTGATATGGAAATATTATCATTAAGCGGTAATTTTTGCACGGATAAAAAGCCAGCAGCAGTAAATTGGGTTTGTGGTAGAGGCAAAAGTGTGGTTTGCGAAGCAGTTGTACCTGCAGATATTGTTACAAATGTGTTAAAAACATCTGTTCATGCTTTAGNTGATGTGAATATAAGTAAAAATATGATT]


>consensus_2398#0 TACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTGAATTGTATTATGTACCAATGG CAACAACAGAAGGATGTTTAGTAGCATCTACAAATCGTGGTAGTAGAGCATTGTTAAAAT GTGGTGTAACAAGCCGTGTAGTTGCTGATGGAATGACTAGAGGACCAGTTGTGAGATTTC CAAATATTGTTAGAGCAAGTGAAGCTATGGCATGGATGCAAGATCCTGATAATTTTAAAG AAATGAAAAATAGTTTTAATTTAACCAGTAGATTTGCACGTTTGACAAAGATTAATATAC GTATTGCTGGCAGGCATTTGTTTATTCGTTTTGTAGCAACTACTGGTGACGCTATGGGAA TGAATATGTTATCTAAAGGAACTGAAAAATCATTAAATACAGTGAAAGAACATTTTCCTG ATATGGAAATATTATCATTAAGCGGTAATTTTTGCACGGATAAAAAGCCAGCAGCAGTAA ATTGGGTTTGTGGTAGAGGCAAAAGTGTGGTTTGCGAAGCAGTTGTACCTGCAGATATTG TTACAAATGTGTTAAAAACATCTGTTCATGCTTTAGNTGATGTGAATATAAGTAAAAATA TGATT



consensusID : consensus_2398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence
                              [TTCACAAATTCCCAGATCTGTAGAAGAATGTCTTAAAATATACAAATCTGAGCTTGGTGCAAATGGATTAACAGATGAAGAAGTAATTCAATTGGTAAAGAACAATCATATAGCTGCTTATCAATTAGAAAAAGCAGTTGGTGATATGGAACGGGGTGTAGAAATCAGGCGTTTTATAATAGGAGAGGCTGGAAATTNCCTTGATTATCTTTCCAATTTGCCATATAAAGATTATGATTATAGTAAAGTATTAGGAGCTTGTTGTGAGAATGTCATGGGATATGTACCAGTACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTG]

[+] EMBL BI511989             [TTCACAAATTCCCAGATCTGTAGAAGAATGTCTTAAAATATACAAATCTGAGCTTGGTGCAAATGGATTAACAGATGAAGAAGTAATTCAATTGGTAAAGAACAATCATATAGCTGCTTATCAATTAGAAAAAGCAGTTGGTGATATGGAACGGGGTGTAGAAATCAGGCGTTTTATAATAGGAGAGGCTGGAAATTNCCTTGATTATCTTTCCAATTTGCCATATAAAGATTATGATTATAGTAAAGTATTAGGAGCTTGTTGTGAGAATGTCATGGGATATGTACCAGTACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTG]


>consensus_2398#1 TTCACAAATTCCCAGATCTGTAGAAGAATGTCTTAAAATATACAAATCTGAGCTTGGTGC AAATGGATTAACAGATGAAGAAGTAATTCAATTGGTAAAGAACAATCATATAGCTGCTTA TCAATTAGAAAAAGCAGTTGGTGATATGGAACGGGGTGTAGAAATCAGGCGTTTTATAAT AGGAGAGGCTGGAAATTNCCTTGATTATCTTTCCAATTTGCCATATAAAGATTATGATTA TAGTAAAGTATTAGGAGCTTGTTGTGAGAATGTCATGGGATATGTACCAGTACCACTTGG AATTGCTGGTCCATTATTACTTGATGGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2398#0      TACCACTTGGAATTGCTGGTCCATTATTACTTGATGGTGAATTGTATTATGTACCAATGG 60
consensus_2398#1      ---------------------------------------------TTCACAAATTCCCAG 15
                                                                    * *   *      *

consensus_2398#0      CAACAACAGAAGGATGTTTAGTAGCATCTACAAATCGTGG--TAGTAGAGCATTGTTAAA 118
consensus_2398#1      -ATCTGTAGAAGAATGTCT--TAAAATATACAAATCTGAGCTTGGTGCAAATGGATTAAC 72
                       * *   ***** **** *  **  ** ********   *  * **  *      **** 

consensus_2398#0      ATGTGGTGTAACAAGCCGTGTAGTTGCTGATGGAATGACTAGAGGACCAGTTGTGAGATT 178
consensus_2398#1      AGATG----AAGAAGTAATTCAATTGGTAA-AGAACAATCATATAGCTGCTTATCA-ATT 126
                      *  **    ** ***   *  * *** * *  ***  *  * *   *   ** * * ***

consensus_2398#0      TCCAAATATTGTTAGAGCAAGTGAAGCTATGGCATGGATGCAAGATCCTGATAATTTTAA 238
consensus_2398#1      AGAAAAAGCAGTTGGTG-ATATGGAACGGGGTGTAGAAATCAGGCGTTTTATAAT--AGG 183
                         ***    *** * * *  ** * *   *    * *  ** *    * *****     

consensus_2398#0      AGAAATGAAAAATAGTTTTAATTTAACCAGTAGATTTGCACGTTTGACAAAGATTAATAT 298
consensus_2398#1      AGAGGCTGGAAATTNCCTTGATT-ATCTTTCCAATTTGC-CATATAAAGATTATGATTAT 241
                      ***      ****    ** *** * *      ****** * * * *  *  ** * ***

consensus_2398#0      A-CGTATTGCTGGCAGGCATTTGTTTATTCGTTTTGTAGCAACTACTGGTGACGCTATGG 357
consensus_2398#1      AGTAAAGTATTAGGAGCTTGTTGTGAGAATGTCATGGGATATGTACCAGTACCACT-TGG 300
                      *    * *  * * **    ****      **  **    *  ***  **  * ** ***

consensus_2398#0      GAATG--AATATGTTATCTAAAGGAACTGAAAAATCATTAAATACAGTGAAAGAACATTT 415
consensus_2398#1      AATTGCTGGTCCATTATTACTTGATGGTG------------------------------- 329
                       * **    *   ****     *    **                               

consensus_2398#0      TCCTGATATGGAAATATTATCATTAAGCGGTAATTTTTGCACGGATAAAAAGCCAGCAGC 475
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      AGTAAATTGGGTTTGTGGTAGAGGCAAAAGTGTGGTTTGCGAAGCAGTTGTACCTGCAGA 535
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      TATTGTTACAAATGTGTTAAAAACATCTGTTCATGCTTTAGNTGATGTGAATATAAGTAA 595
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      AAATATGATT 605
consensus_2398#1      ----------
                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)