These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 648 fasta sequence [GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA] [+] EMBL BI510867 [GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACATGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACA ] [+] EMBL BI502796 [ GTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAACTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA] [+] EMBL BI504675 [ GTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAACTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGA ] [+] EMBL BI508029 [ GCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACATGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCGGTACAGAGAAGTTGTGTTGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA] consensusID : consensus_243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CGTACAGCTGGGATAATCGAGTAGATTTCATTGTAAGATTTCTTTACGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCA] [+] EMBL BI512529 [CGTACAGCTGGGATAATCGAGTAGATTTCATTGTAAGATTTCTTTACGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_243#0 GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCA 60 consensus_243#1 ------------------------------------------------------------ consensus_243#0 ATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTAC 120 consensus_243#1 ------------------------------------------------------------ consensus_243#0 ACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACA 180 consensus_243#1 -CGTAC-AGCTGGGATAATC-GAGTAGATTT-CATTGTAAGATTTCT-----TTACGACA 51 ** ** **** *** * * * ** * * * * ***** ** **** consensus_243#0 CGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTT 240 consensus_243#1 CGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTT 111 ************************************************************ consensus_243#0 TGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGC 300 consensus_243#1 TGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGC 171 ************************************************************ consensus_243#0 TTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCA 360 consensus_243#1 TTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCA 231 ******* **************************************************** consensus_243#0 TTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTC 420 consensus_243#1 TTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTC 291 ************************************************************ consensus_243#0 CACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACG 480 consensus_243#1 CACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACG 351 ************************************************************ consensus_243#0 GTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACG 540 consensus_243#1 GTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACG 411 ************************************************************ consensus_243#0 TAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAG 600 consensus_243#1 TAAATATTTTGGATGAGGCTTATCA----------------------------------- 436 ************************* consensus_243#0 GATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA 648 consensus_243#1 ------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |