These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG] [+] EMBL BI516235 [CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG] consensusID : consensus_259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA] [+] EMBL BI507001 [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA] [+] EMBL BI506741 [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGATAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGT ] [+] EMBL BI508845 [ CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCTCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCA ] consensusID : consensus_259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT] [+] EMBL BI508590 [CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_259#1 CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 60 consensus_259#2 ---------CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 51 consensus_259#0 ------------------------------------------------------------ consensus_259#1 CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 120 consensus_259#2 CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 111 consensus_259#0 ----------------------------------------CAGAACGCAAAGTATAGTAG 20 ******************** consensus_259#1 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 180 consensus_259#2 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 171 consensus_259#0 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 80 ************************************************************ consensus_259#1 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 240 consensus_259#2 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 231 consensus_259#0 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 140 ************************************************************ consensus_259#1 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 300 consensus_259#2 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 291 consensus_259#0 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 200 ************************************************************ consensus_259#1 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 344 consensus_259#2 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 335 consensus_259#0 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCT 260 ******************************************** consensus_259#1 -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 391 consensus_259#2 -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 382 consensus_259#0 TGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 320 *********************************************** consensus_259#1 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 451 consensus_259#2 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 442 consensus_259#0 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 380 ************************************************************ consensus_259#1 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 511 consensus_259#2 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 502 consensus_259#0 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 440 ************************************************************ consensus_259#1 GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 569 consensus_259#2 AACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT------------------- 543 consensus_259#0 GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 498 *** * ** ** * ** ** * ** * * ** consensus_259#1 GGTCAGA----------------------------------------------------- 576 consensus_259#2 ------------------------------------------------------------ consensus_259#0 GGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTT 558 consensus_259#1 ------------------- consensus_259#2 ------------------- consensus_259#0 CTCAGTGGGAAAAACCACG 577 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |