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Apis mellifera
cluster # 259 cluster # 259       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_259#0 length = 577 sequences # 1  
consensus_259#1 length = 576 sequences # 3  
consensus_259#2 length = 543 sequences # 1  

consensusID : consensus_259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence
                              [CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG]

[+] EMBL BI516235             [CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG]


>consensus_259#0 CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGAT AGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGG GGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCC CTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTAT TCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGA GAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAA TTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAAC CATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTT CAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACA ACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG



consensusID : consensus_259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 576
fasta sequence
                              [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA]

[+] EMBL BI507001             [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA]
[+] EMBL BI506741             [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGATAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGT                                                        ]
[+] EMBL BI508845             [         CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCTCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCA  ]


>consensus_259#1 CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCC AAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAG TAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATC TCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGC AATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA



consensusID : consensus_259#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT]

[+] EMBL BI508590             [CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT]


>consensus_259#2 CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGG GTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGG TGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTC CCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAG AGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGA CTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAA GAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGA AATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAA ACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGA GGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_259#1      CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 60
consensus_259#2      ---------CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 51
consensus_259#0      ------------------------------------------------------------
                                                                                 

consensus_259#1      CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 120
consensus_259#2      CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 111
consensus_259#0      ----------------------------------------CAGAACGCAAAGTATAGTAG 20
                                                             ********************

consensus_259#1      TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 180
consensus_259#2      TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 171
consensus_259#0      TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 80
                     ************************************************************

consensus_259#1      GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 240
consensus_259#2      GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 231
consensus_259#0      GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 140
                     ************************************************************

consensus_259#1      AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 300
consensus_259#2      AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 291
consensus_259#0      AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 200
                     ************************************************************

consensus_259#1      AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 344
consensus_259#2      AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 335
consensus_259#0      AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCT 260
                     ********************************************                

consensus_259#1      -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 391
consensus_259#2      -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 382
consensus_259#0      TGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 320
                                  ***********************************************

consensus_259#1      TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 451
consensus_259#2      TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 442
consensus_259#0      TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 380
                     ************************************************************

consensus_259#1      TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 511
consensus_259#2      TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 502
consensus_259#0      TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 440
                     ************************************************************

consensus_259#1      GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 569
consensus_259#2      AACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT------------------- 543
consensus_259#0      GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 498
                      ***  * **    **  * ** ** * **     * * **                   

consensus_259#1      GGTCAGA----------------------------------------------------- 576
consensus_259#2      ------------------------------------------------------------
consensus_259#0      GGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTT 558
                                                                                 

consensus_259#1      -------------------
consensus_259#2      -------------------
consensus_259#0      CTCAGTGGGAAAAACCACG 577
                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)