These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_26#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 687 fasta sequence [CATGGTTTAATCAACCTGCCAGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTATAAAAAATAAATTGTCTAACGAAAAAAAAAAAAAAAAAAA] [+] EMBL BI516396 [CATGGTTTAATCAACCTGCCAGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAA ] [+] EMBL BI514589 [ AGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAA ] [+] EMBL BI515801 [ GTCGTAAACAAAATCGTGT AAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAANNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTA ] [+] EMBL BI509683 [ GTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGGCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTATAAAAAATAAATTGTCTAACGAAAAAAAAAA ] [+] EMBL BI515816 [ GTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGGCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTAT ] [+] EMBL BI509657 [ TAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTATAAAAAATAAATTGTCTAACGAAAAATAAAAAAAAAAAAA] [+] EMBL BI509177 [ AAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGGCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTATAAAAA ] [+] EMBL BI509915 [ AAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGGCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTAT ] [+] EMBL BI516892 [ AACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTA ] [+] EMBL BI512905 [ CAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAANNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTAT ] [+] EMBL BI516193 [ GTAAAAAAAGCCCGTACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAGAAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAATTCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAAAGATAAAAAGNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATTATAAAATTTATAATTATAAAAAATAAA ] [+] EMBL BI516122 [ ACTGTCGCACCAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCA ] consensusID : consensus_26#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CAGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGGTAAATAAAAAAACAATTTATTTTTATTTTTAAAATTTTTTATAGTATTTTTTATAATATTTTAATGTTTTATATAATATTTTTAATATTTTATATAAATTATATTTCTATTTATATTTTAACTATATTATTAATTTTAATAATTTAATATTCTTTTAAAATTTTAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAG] [+] EMBL BI510391 [CAGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGGTAAATAAAAAAACAATTTATTTTTATTTTTAAAATTTTTTATAGTATTTTTTATAATATTTTAATGTTTTATATAATATTTTTAATATTTTATATAAATTATATTTCTATTTATATTTTAACTATATTATTAATTTTAATAATTTAATATTCTTTTAAAATTTTAAGACCTGTAAAACTTTTAAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGGTTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGGAATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCAAAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAAAAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCATGCCAGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_26#0 ------------------------------------------------------------ consensus_26#1 CAGAAAATATCGTCGTAAACAAAATCGTGTAAAAAAAGCCCGTACTGTCGCACCAAGGTA 60 consensus_26#0 ------------------------------------------------------------ consensus_26#1 AATAAAAAAACAATTTATTTTTATTTTTAAAATTTTTTATAGTATTTTTTATAATATTTT 120 consensus_26#0 ---------------------CATGGTTTAATCAACCTGCCAGAAAATATCGTCGTAAAC 39 consensus_26#1 AATGTTTTATATAATATTTTTAATATTTTATATAAATTATATTTCTATTTATATTTTAAC 180 ** **** ** * ** * * *** consensus_26#0 AAAATCGTGTAA---AAAAAGCCCGTACTGTCGCA-----CCAAGACCTGTAAAACTTTT 91 consensus_26#1 TATATTATTAATTTTAATAATTTAATATTCTTTTAAAATTTTAAGACCTGTAAAACTTTT 240 * ** * * ** ** ** * * * ****************** consensus_26#0 AAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGG 151 consensus_26#1 AAGACCTGTTGTTCATTGTCCAACATTTCGTTATCATACAAAAGTTAGGGCAGGTAAAGG 300 ************************************************************ consensus_26#0 TTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGG 211 consensus_26#1 TTTTACATTAGAAGAATTAAAAGCAAGTGGTTTAAATAAAAGATTTGCTAGGACTATTGG 360 ************************************************************ consensus_26#0 AATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCA 271 consensus_26#1 AATTGCAGTAGATCCTAGAAGACGTAACAAATCAGTTGAATCTTTGCAAACAAATGCTCA 420 ************************************************************ consensus_26#0 AAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAA 331 consensus_26#1 AAGATTAAAAGAATATAAATCAAAATTGATTCTCTTCCCATTAAATGAAAAGAAACCTAA 480 ************************************************************ consensus_26#0 AAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCAT 391 consensus_26#1 AAAGGGTGATGCTAGTGAGGAGGAGATGAAACTTGCTACTCAAGTTAAAGGAGAAATCAT 540 ************************************************************ consensus_26#0 GCCAGTAAGACACCAAGCACCAGCTAAAGCTAAAGCACGTGTGATTTCTGAAGAAGAAAG 451 consensus_26#1 GCCAGTAAG--------------------------------------------------- 549 ********* consensus_26#0 AAAATTCTCTGCATATGTAACTCTCCGTAAAGCTAGAGCTGATGCTAGATTAGTAGGAAT 511 consensus_26#1 ------------------------------------------------------------ consensus_26#0 TCGTGCGAAACGTGTAAAAGATGCAGCAGAAAATCCAGATGATGTTACCAAAGTTGGTAA 571 consensus_26#1 ------------------------------------------------------------ consensus_26#0 AGATAAAAAGNCTAAAAAATAATATGAAATTTATATTATAAAAAATTAAATATAATAATT 631 consensus_26#1 ------------------------------------------------------------ consensus_26#0 ATAAAATTTATAATTATAAAAAATAAATTGTCTAACGAAAAAAAAAAAAAAAAAAA 687 consensus_26#1 -------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |