These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGCGGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGGGTTGGCCTCGGCAGCCCCCTCGGCCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCAAGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGGAGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACATGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG] [+] EMBL BI509277 [ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGCGGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGGGTTGGCCTCGGCAGCCCCCTCGGCCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCAAGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGGAGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACATGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG] consensusID : consensus_2764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGAAAGACTCTAGTGGACGGCTATGACAGTGCAGTGACTCGCTGATTTGTTATTTGTTTTTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACATGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC] [+] EMBL BI509543 [AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGAAAGACTCTAGTGGACGGCTATGACAGTGCAGTGACTCGCTGATTTGTTATTTGTTTTTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACATGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2764#0 ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGA 60 consensus_2764#1 ------------------------------------------------------------ consensus_2764#0 CGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCC 120 consensus_2764#1 ------------------------------------------------------------ consensus_2764#0 GGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGC 180 consensus_2764#1 ----AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGA 56 * * ** * ** ** * * * * *** * consensus_2764#0 GGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGG 240 consensus_2764#1 AAGACTCTAGTG--GACGGCTATG--ACAGTGCAGTGACTCGCTGATTTGTTATTTGTTT 112 * * * * *** ** * ** * *** * ** * * * ** consensus_2764#0 GTTG-GCCTCGGCAGCCCCCTCGG-CCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCA 298 consensus_2764#1 TTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCT 172 ** * *** ** * * **** * ** * * * ** consensus_2764#0 AGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGG 358 consensus_2764#1 TTGTGGAGGAAGACGAGACGAGAGTCT-----CAACCACGGCACC--AAAATTGAGCTGG 225 * * *** * * **** * * * ** * ** ** * * ** consensus_2764#0 AGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCT 418 consensus_2764#1 A-----CTTGCACCAACGGGCCGCCGG---CCACTTTATGAGGCGCCGAATGGAAACTCT 277 * * * * * * *** * ******************* consensus_2764#0 TAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACA 478 consensus_2764#1 TAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACA 337 **************************************************** ******* consensus_2764#0 TGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAG 538 consensus_2764#1 TGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAG 397 **************************** ******************************* consensus_2764#0 AAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG- 583 consensus_2764#1 AAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC 443 *** * *************************************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |