cluster # 2910

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Apis mellifera
cluster # 2910 cluster # 2910 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2910#0 length = 419 sequences # 1

consensus_2910#1 length = 274 sequences # 1

consensusID : consensus_2910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CCTCGAGCAATCTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTCCTCCGTGCCGCGCAGTTGCGTTGACGGCTGCCGCTCTCGACATCGAGATGAATTTCAAACAGGTCAATTTGATGAACGGGGAACACTTGAAGCCTGAATTTTTAAAGATAAACCCGCAACACACGATACCCACGATTGATGACAATGGTTTCCGTCTGTGGGAAAGCCGAGCCATCATGACGTACTTGGCGGACCAATACGGCAAAAATGACACTCTGTACCCGAAGGATCTGAAGAAACGGGCGATCGTCAATCAAAGATTGTACTTCGACATGTGCAGTTTATACAAATCGTTCATGGATTATTACTATCCAATCATTTTCATGAAAGCGGTTAAAGATCAAGCGAAATACGAAAACATCG]

[+] EMBL BE844335             [CCTCGAGCAATCTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTCCTCCGTGCCGCGCAGTTGCGTTGACGGCTGCCGCTCTCGACATCGAGATGAATTTCAAACAGGTCAATTTGATGAACGGGGAACACTTGAAGCCTGAATTTTTAAAGATAAACCCGCAACACACGATACCCACGATTGATGACAATGGTTTCCGTCTGTGGGAAAGCCGAGCCATCATGACGTACTTGGCGGACCAATACGGCAAAAATGACACTCTGTACCCGAAGGATCTGAAGAAACGGGCGATCGTCAATCAAAGATTGTACTTCGACATGTGCAGTTTATACAAATCGTTCATGGATTATTACTATCCAATCATTTTCATGAAAGCGGTTAAAGATCAAGCGAAATACGAAAACATCG]




>consensus_2910#0
CCTCGAGCAATCTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTCCTCC
GTGCCGCGCAGTTGCGTTGACGGCTGCCGCTCTCGACATCGAGATGAATTTCAAACAGGT
CAATTTGATGAACGGGGAACACTTGAAGCCTGAATTTTTAAAGATAAACCCGCAACACAC
GATACCCACGATTGATGACAATGGTTTCCGTCTGTGGGAAAGCCGAGCCATCATGACGTA
CTTGGCGGACCAATACGGCAAAAATGACACTCTGTACCCGAAGGATCTGAAGAAACGGGC
GATCGTCAATCAAAGATTGTACTTCGACATGTGCAGTTTATACAAATCGTTCATGGATTA
TTACTATCCAATCATTTTCATGAAAGCGGTTAAAGATCAAGCGAAATACGAAAACATCG

consensusID : consensus_2910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [GAGAGGTATGGTGGATCAAAATGCTGTATTTTGACATAGGTATCCTTAACGAGAACGTGGTTAAATGTTACTACTCGCCAACATTTTTGAAGGCGCATTCCTTGGACGAGGAGAGGTGTGGAGAGATAGTGCGAGATGTTGAACGCGTTTCTCAACGATCGCGAGTACGTTGCCGGCGACACGCTTACCGTTGCTGATTTTGCCATCCACACGACCATTTGCGTCTCCGTTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTC]

[+] EMBL BI505785             [GAGAGGTATGGTGGATCAAAATGCTGTATTTTGACATAGGTATCCTTAACGAGAACGTGGTTAAATGTTACTACTCGCCAACATTTTTGAAGGCGCATTCCTTGGACGAGGAGAGGTGTGGAGAGATAGTGCGAGATGTTGAACGCGTTTCTCAACGATCGCGAGTACGTTGCCGGCGACACGCTTACCGTTGCTGATTTTGCCATCCACACGACCATTTGCGTCTCCGTTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTC]




>consensus_2910#1
GAGAGGTATGGTGGATCAAAATGCTGTATTTTGACATAGGTATCCTTAACGAGAACGTGG
TTAAATGTTACTACTCGCCAACATTTTTGAAGGCGCATTCCTTGGACGAGGAGAGGTGTG
GAGAGATAGTGCGAGATGTTGAACGCGTTTCTCAACGATCGCGAGTACGTTGCCGGCGAC
ACGCTTACCGTTGCTGATTTTGCCATCCACACGACCATTTGCGTCTCCGTTGAAATTAAA
ATGCCGATCGATTTTTATCAACTTCCCGGAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2910#0      CCTCGAGCAATCTGAAATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTCCTCC 60
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      GTGCCGCGCAGTTGCGTTGACGGCTGCCGCTCTCGACATCGAGATGAATTTCAAACAGGT 120
consensus_2910#1      ------------------------------------------------------------
                                                                                  

consensus_2910#0      CAATTTGATGAACGGGGAACACTTGAAGCCTGAATTTTTAAAGATAAACCCGCAACACAC 180
consensus_2910#1      ------GAGAGGTATGGTGGATCAAAATGCTGTATTTTGACATAGGTATCCTTAACG-AG 53
                            **       **   *    **  *** ***** * * *   * **  ***  * 

consensus_2910#0      GATACCCACGATTGATGACAATGGTTTCCGTCTGTGGGAAAGCCGAGCCATCATGACGTA 240
consensus_2910#1      AACGTGGTTAAATGTTACTACTCGCCAACATTTTTGAAGGCGCATTCCTTGGACGAGGAG 113
                       *        * ** *   * * *    * * * **     **    *    * ** *  

consensus_2910#0      CTTGGCGGACCAATACGGCAAAAATGACACTCTGTACCCGAAGGATCTGAAGAAACGGGC 300
consensus_2910#1      AGGTGTGGAGAGATAGTGCGAGATGTTGAACGCGTTTCTCAACGATCGCGAGTACGTTGC 173
                          * ***   ***  ** * *     *    **  *  ** ****   ** *    **

consensus_2910#0      GATCGTCA-ATCAAAGATTGT--ACTTCGACATGTGCA-GTTTATACAAATCGTTCATGG 356
consensus_2910#1      CGGCGACACGCTTACCGTTGCTGATTTTGCCATCCACACGACCATTTGCGTCTCCGTTGA 233
                         ** **     *   ***   * ** * ***   ** *   **     **     ** 

consensus_2910#0      ATTATTACTATCCAATCATTTTCATGAAAGCGGTTAAAGATCAAGCGAAATACGAAAACA 416
consensus_2910#1      AATTAAAATGCCGATCGATTTTTATCAACTTCCCGGAAGTC------------------- 274
                      * *   * *  * *   ***** ** **        ***                     

consensus_2910#0      TCG 419
consensus_2910#1      ---

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)