These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [ACCGACCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATTTCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCTTCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGGGAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTATGAGATCTCTCACTTTTTCTTTTATCGGTAAATTGATCGATTGACGCGTAGAATGAGACTAATCGAGAGAGAGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGATGTCAATGAGCGAATTTTTAGCGAGAATTATGGGAGGATACTGCGTATTTAATTGTATTCCACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGATTGAGGAAAAGGGGGATAGAGGGAAGAGTATATTATAGGAACCAAAAATAGAGGA] [+] EMBL BI508701 [ACCGACCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATTTCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCTTCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGGGAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTATGAGATCTCTCACTTTTTCTTTTATCGGTAAATTGATCGATTGACGCGTAGAATGAGACTAATCGAGAGAGAGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGATGTCAATGAGCGAATTTTTAGCGAGAATTATGGGAGGATACTGCGTATTTAATTGTATTCCACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGATTGAGGAAAAGGGGGATAGAGGGAAGAGTATATTATAGGAACCAAAAATAGAGGA] consensusID : consensus_313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 521 fasta sequence [TCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATTTCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCTTCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGGGAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTGCGAGAGTCACTTTTTCTTTTATCCTAGNAAGAATACTTGAGTATTTTTCGGTAAATTGATCGATTGACGCGTAGNATGAGACTAATCGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGCTGTTGTCAACGAGCGAGTTTTTAGCGAGAATTATGGGAGGATACTCGCTGCGTATTTAATTGTATTCTACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGATTGA] [+] EMBL BI509681 [TCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATTTCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCTTCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGGGAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTGCGAGAGTCACTTTTTCTTTTATCCTAGNAAGAATACTTGAGTATTTTTCGGTAAATTGATCGATTGACGCGTAGNATGAGACTAATCGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGCTGTTGTCAACGAGCGAGTTTTTAGCGAGAATTATGGGAGGATACTCGCTGCGTATTTAATTGTATTCTACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGATTGA] [+] EMBL BI512916 [TCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATTTCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCTTCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGGGAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTGCGAGAGTCACTTTTTCTTTTATCCTAGGAAGAATACTTGAGTATTTTTCGGTAAATTGATCGATTGACGCGTAGAATGAGACTAATCGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGCTGTTGTCAACGAGCGAGTTTT ] consensusID : consensus_313#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 198 fasta sequence [TCAGAATCGTTCCAGACAAATATTTCGTGGAGATATATAACGTCGTCTCGAACCAACCGACCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI504155 [TCAGAATCGTTCCAGACAAATATTTCGTGGAGATATATAACGTCGTCTCGAACCAACCGACCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAATCAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL BI506929 [ CAAATATTTCGTGGAGATATATAACGTCGTCTCGAACCAACCGACCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTATTATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_313#0 -------------------------------------------------------ACCGA 5 consensus_313#1 ------------------------------------------------------------ consensus_313#2 TCAGAATCGTTCCAGACAAATATTTCGTGGAGATATATAACGTCGTCTCGAACCAACCGA 60 consensus_313#0 CCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTAT 65 consensus_313#1 ---------------TCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTAT 45 consensus_313#2 CCGAGGATTGATTGATCGACTGAGGAAACTTCGTTTCGAAAAGCTTCCGTTTATTATTAT 120 ********************************************* consensus_313#0 TATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATT 125 consensus_313#1 TATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAGGGGATTGGATTATT 105 consensus_313#2 TATTATTGTTATTATTTGATTAAATCGACGTCTCTTGTCGGCTTAATCAAAAAAAAAAAA 180 ********************************************* * * * consensus_313#0 TCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCT 185 consensus_313#1 TCACGTCTATTAATATTTCGCATATTGTAGGAAAGACTCCAAAACCTCTTTCGCTTTTCT 165 consensus_313#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 198 * * ** * consensus_313#0 TCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGG 245 consensus_313#1 TCTCACGAAGGAAGAGTTGCGAGAGGTTGTTTTAAGTGGCCTCCCAATCTCGCGGAACGG 225 consensus_313#2 ------------------------------------------------------------ consensus_313#0 GAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTATGAGA-----TCTCTCACTTTT 300 consensus_313#1 GAGTCTTTCACGAGAATATATTTTACGAGATCTCTGTGCGAGAGTCACTTTTTCTTTTAT 285 consensus_313#2 ------------------------------------------------------------ consensus_313#0 TCT------------------TTTATCGGTAAATTGATCGATTGACGCGTAGAATGAGAC 342 consensus_313#1 CCTAGNAAGAATACTTGAGTATTTTTCGGTAAATTGATCGATTGACGCGTAGNATGAGAC 345 consensus_313#2 ------------------------------------------------------------ consensus_313#0 TAATCGAGAGAGAGAGAGAGAGAGAGGAACGTAATTTGGAAATTGATTTCGATGT---CA 399 consensus_313#1 TAATCGAGAGAGAG--------AGAGGAACGTAATTTGGAAATTGATTTCGCTGTTGTCA 397 consensus_313#2 ------------------------------------------------------------ consensus_313#0 ATGAGCGAATTTTTAGCGAGAATTATGGGAGGATACT----GCGTATTTAATTGTATTCC 455 consensus_313#1 ACGAGCGAGTTTTTAGCGAGAATTATGGGAGGATACTCGCTGCGTATTTAATTGTATTCT 457 consensus_313#2 ------------------------------------------------------------ consensus_313#0 ACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGA 515 consensus_313#1 ACTCGAAGAATTTTAGATTTCTCGATCTTGCGAATCGAATGGGAGGAAAGGATGTAGAGA 517 consensus_313#2 ------------------------------------------------------------ consensus_313#0 TTGAGGAAAAGGGGGATAGAGGGAAGAGTATATTATAGGAACCAAAAATAGAGGA 570 consensus_313#1 TTGA--------------------------------------------------- 521 consensus_313#2 ------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |