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Apis mellifera
cluster # 315 cluster # 315       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_315#0 length = 1002 sequences # 2  
consensus_315#1 length = 672 sequences # 2  
consensus_315#2 length = 515 sequences # 1  

consensusID : consensus_315#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1002
fasta sequence
                              [GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCTTCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTTTGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGATAAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAGACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGAATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATTGTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATGGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGTTTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATATTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG]

[+] EMBL BI504109             [GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCTTCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTTTGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGATAAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAGACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGAATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATTGTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATAGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACAT                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI510392             [                                                                                                                                                                                                                                                                                                                                                                                     TATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTTTTTCATGGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGTTTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATATTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG]


>consensus_315#0 GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCT TCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTT TGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGAT AAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAG ACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGA ATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATT GTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTT TTTCATGGAGTTTCATCCCAAACATTTTTGAAAATATTCGAGTTTATTCCATTGTCAATG GATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGT TTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGC GCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAG ATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATT GTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAG TATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCA AGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGTTTC ATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATATTG TGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG



consensusID : consensus_315#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence
                              [TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACAAGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCGAGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCACAAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAAACATTTACTGGCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGTGTCGTCCAATAAGTACGGAACGTGTTACATGTATGTATATATATACGCGTGTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAATTTCAATTTGTATCGATATTATTTTCAAGACCTAAAAATTTAGTTAGGAATGTAAGGAAAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAAAGAGAAACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG]

[+] EMBL BI514524             [TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACAAGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCGAGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCACAAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAAACATTTACTGGCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCT                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI514272             [                                                                                                                                                                                                                                                                                 TTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGTGTCGTCCAATAAGTACGGAACGTGTTACATGTATGTATATATATACGCGTGTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAATTTCAATTTGTATCGATATTATTTTCAAGACCTAAAAATTTAGTTAGGAATGTAAGGAAAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAAAGAGAAACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG]


>consensus_315#1 TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACAAGTTATTTCA TTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCGAGGAATTATT TAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCACAAGCTAAATA CGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAAACATTTACTGGCCCATTTTTT CTATTTTTCATAATATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTT CCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACC TTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGTGTCGTCCAATAAGTACGG AACGTGTTACATGTATGTATATATATACGCGTGTCTAGGAGGACAAAAAACCGAATGGAA AAAAAAAAAAAAAAAAATTTCGTGTTTCGAAATTTCAATTTGTATCGATATTATTTTCAA GACCTAAAAATTTAGTTAGGAATGTAAGGAAAGGGTGTAAAGGAAGTTGGAAAGAAAAAA GCGCATTCGTAAAAGGAATACAAAGAGAAACAAATGAAGAGGGTGTGTGTCTAAGTGCTT ATCAAGGATAAG



consensusID : consensus_315#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [ATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATA]

[+] EMBL BI506938             [ATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCATAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAAGCAAGTAATATA]


>consensus_315#2 ATCGTGCAATTGGAGTTTTTTTAATACAGTGAGCGAAATATTTGTTCCACTATTTCGCGG ATTAATGGTCGATTAACTTAGGCTGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTA TTGTTGTTTATAGATTTTTGTCATAGGATTATATTATAATACTAATGCAAAGGGGAAGTG AGAGTGTGCATTTTAGTTCTCACAGTTTGCCTCAAAACATACCAAACAAAAAAGATACAG TAAAAATATAATGTACACACGCGCGCGCGCGTGCGCGCACACACATACACACACCACACA CAGAAAATATATGTGTGTCATTATAGATATTCAAAATATATATACATATATATTTATATG TATATACAGCATAAAACTGAAAGATTGTACTGTATCAGAATATGTAATATTTTGTGTTAT GATTGGAATTTATTGTAATTCAAAAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTC GGAACTTAACTGGTTAAAATTAAGCAAGTAATATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_315#0      GTACATTAAGTACCTATATTTCCACCATTTTACTGGATTTCCGGGCTATCGATCGACGCT 60
consensus_315#2      ------------------------------------------------------------
consensus_315#1      ------------------------------------------------------------
                                                                                 

consensus_315#0      TCGCCAATTATGAAAGCCGGTGGCAGATAATGACAGCGTGTCAGAAATGCACATTTAGTT 120
consensus_315#2      ------------------------------------------------------------
consensus_315#1      ----------TCTTATATTTTTCTTTCTTACTCCAATTACTTTCTTCTACGGCAAATACA 50
                                                                                 

consensus_315#0      TGCGAATAAGTTTATTAAAAGCGTGCATGTCTTTATATGTAAAAGAAAAAGAAAATGGAT 180
consensus_315#2      ------------------------------------------------------------
consensus_315#1      AGTTATTTCATTTCTTTGCGCTTTATAAGTAACCGTTGTAACTTAGTAACTCTTAGTTCG 110
                                                                                 

consensus_315#0      AAAAATTATGATTAATTCAAACTTGTTAAAACAGAAGTTATACTGGAAATTAATGAAAAG 240
consensus_315#2      ------------------------------------------------------------
consensus_315#1      AGGAATTATTTAGAAAGCTTTTTAAGTAACAATATATTTTTTTTTTTTATATATCGCCAC 170
                                                                                 

consensus_315#0      ACATTGTGTTATAATACTAATTTACTGCTAAACGAGGAAAATGATAAAAGAAATTAAAGA 300
consensus_315#2      ------------------------------------------------------------
consensus_315#1      AAGCTAAATACGTTCGATAATTTTAATACATTCGAATAGAGCAGGCTAA-ACATTTACTG 229
                                                                                 

consensus_315#0      ATTAAATTTTGGTAAATAAGTCTTTCTTTTCAAATAAGAGTCCTAGAAGTTATACAGATT 360
consensus_315#2      -------------------------ATCGTGCAATTGGAGTTTTTT---TAATACAG--- 29
consensus_315#1      GCCCATTTTTTCTATTTTTCATAATATCGTGCAATTGGAGTTTTTT---TAATACAG--- 283
                                               *  *  ***  ****  *     * ******   

consensus_315#0      GTTTTTTTGGAAATATATTGAGTGCAATATTTGACATACATTAAATATATGAAGCTAGTT 420
consensus_315#2      ------TGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGC 83
consensus_315#1      ------TGAGCGAAATATTTGTTCCACTATTTCGCGGATTAATGGTCGATTAACTTAGGC 337
                           *  *  * *****   * ** *****  *  *       *  ** **  ***  

consensus_315#0      TTTCATGGAGTTTCATCCCAAACATTTTTGAAAAT-ATTCGAGTTTATT--CCATTGTCA 477
consensus_315#2      TGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCA 143
consensus_315#1      TGAGACAATCTAAAGTGATAACCTTTTTTTTTTTTTATTGTTGTTTATAGATTTTTGTCA 397
                     *   *     *    *   ** * *****     * ***   ******      ******

consensus_315#0      ATGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCAC 537
consensus_315#2      TAGGATTATATTATAATACTAATGCAAAGGGGAAGTGAGAGTGTGCATTTTAGTTCTCAC 203
consensus_315#1      TAGG--TGTCGTCCAATAAGTACGGAACGTGT---TACATGTATGTATATATATACGCGT 452
                       **  * *  *  ****   * * ** * *    *    ** ** ** *   * * *  

consensus_315#0      AGTTTNCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCG 597
consensus_315#2      AGTTTGCCTCAAAACATACCAAACAAAAAAGATACAGTAAAAATATAATGTACACACGCG 263
consensus_315#1      GTCTAGGAGGACAAAAAACCGAATGGAAAAAAAAAAAAAAAAAAATTTCGTGTTTCGAAA 512
                        *      * ** * *** **   **** * * *  ***** **   **         

consensus_315#0      CGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTA 657
consensus_315#2      CGCGCGCGTGCGCGCACACACATACACACACCACACACAGAAAATATATGTGTGTCATTA 323
consensus_315#1      TTTCAATTTGTATCGATAT-TATTTTCAAGACCTAAAAATTTAGT-TAGGAATGTAAGGA 570
                             **     * *   **   **   *  * * *   * * ** *  *** *  *

consensus_315#0      TAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAG 717
consensus_315#2      TAGATATTCAAAATATATATACATATATATTTATATGTATATACAGCATAAAACTGAAAG 383
consensus_315#1      AAGGGTGTAAAGGAAGTTGGAAAGAAAAAAGCGCATTCGTAAAAGGAATACAA--AGAGA 628
                      **    * **   *  *  * * * * *     **   ** *  * *** **    *  

consensus_315#0      ATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAA 777
consensus_315#2      ATTGTACTGTATCAGAATATGTAATATTTTGTGTTATGATTGGAATTTATTGTAATTCAA 443
consensus_315#1      AACAAATGAAGAGGGTGTGTGTCTAAGTGCTTATCAAGGATAAG---------------- 672
                     *    *        *  * ***   * *   * * * *  *                   

consensus_315#0      AAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAA 837
consensus_315#2      AAGTATTTTGAGAGAGTATCCTTTCTAGCGACGAGTCGGAACTTAACTGGTTAAAATTAA 503
consensus_315#1      ------------------------------------------------------------
                                                                                 

consensus_315#0      GCAAGTAATATATTTATTGAAGTTAAAGTGTGGTAAATTTTAGAAATGTTGGAATTATGT 897
consensus_315#2      GCAAGTAATATA------------------------------------------------ 515
consensus_315#1      ------------------------------------------------------------
                                                                                 

consensus_315#0      TTCATATAACGAGTTACTGATTTATTTCACATGTGCAGTCATATAATGTGAAATGATATA 957
consensus_315#2      ------------------------------------------------------------
consensus_315#1      ------------------------------------------------------------
                                                                                 

consensus_315#0      TTGTGAACACTAAAATAGATACTGAAAAATTATATTATAAATTTG 1002
consensus_315#2      ---------------------------------------------
consensus_315#1      ---------------------------------------------
                                                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)