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Apis mellifera
cluster # 321 cluster # 321       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_321#0 length = 873 sequences # 2  
consensus_321#1 length = 626 sequences # 3  

consensusID : consensus_321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 873
fasta sequence
                              [TCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGAGGAACGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGATCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACACATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCTGTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAACTCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATCGCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAAGAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGCTTTACTCGAAATACTATATATATAT]

[+] EMBL BI505851             [TCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGAGGAACGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGATCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACACATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATA                                                                                                                                                                                                                                                                             ]
[+] EMBL BI505213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCTGTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAACTCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATCGCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAAGAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGCTTTACTCGAAATACTATATATATAT]


>consensus_321#0 TCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACAC GATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAAAAAAAAGGATG AAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGG AGGAGGGCGGAGGAAGAGGAACGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGA TTATAGTCATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGA GTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCAC GGATAGTCACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTT TTCACTGATCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCA CACACACACATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTA ACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAA TATAATCTGTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCT AAGTTAACTCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTA AGTCGATCGCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCA GCGGTAAAGAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATC TTTCGTGCTTTACTCGAAATACTATATATATAT



consensusID : consensus_321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 626
fasta sequence
                              [CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAGAAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAAT]

[+] EMBL BI505050             [CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAGAAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAa                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI505163             [                                                                              AACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGAAAGAAAGGAGGAGGGCGGAGGAAGA GGAACGGAAGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATATGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGC                  ]
[+] EMBL BI503807             [                                                                                                               TATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGG AAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTCACAAGTGCTTCATGGATTTTTTTAAT]


>consensus_321#1 CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAG AAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTC TTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTG GGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAAT CGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTAT CCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTT AGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCG GAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTC ATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAA CCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTC ACGAGTGCTTCATGGATTTTTTTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_321#0      ------------------------------------------------------------
consensus_321#1      CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAG 60
                                                                                 

consensus_321#0      ------------------------------------------------------------
consensus_321#1      AAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTC 120
                                                                                 

consensus_321#0      ------------------------------------------------------------
consensus_321#1      TTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTG 180
                                                                                 

consensus_321#0      -------------------------------------TCTCGATTCGTATTATTGAAAAT 23
consensus_321#1      GGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAAT 240
                                                          ***********************

consensus_321#0      CGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTAT 83
consensus_321#1      CGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTAT 300
                     ************************************************************

consensus_321#0      CCCCGCGACACTTCTTTGCGCCAAA--------------AAAAAAAGGATGAAAATTCTT 129
consensus_321#1      CCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTT 360
                     *************************              *********************

consensus_321#0      AGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCG 189
consensus_321#1      AGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCG 420
                     ************************************************************

consensus_321#0      GAGGAAGAGGAAC-GGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTC 248
consensus_321#1      GAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTC 480
                     ********      **********************************************

consensus_321#0      ATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAA 308
consensus_321#1      ATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAA 540
                     *** ********************************************************

consensus_321#0      CCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTC 368
consensus_321#1      CCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTC 600
                     ************************************  **********************

consensus_321#0      ACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGA 428
consensus_321#1      ACGAGTGCTTCATGGATTTTTTTAAT---------------------------------- 626
                     **************************                                  

consensus_321#0      TCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACA 488
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      CATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAA 548
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      CGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCT 608
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      GTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAAC 668
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      TCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATC 728
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      GCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAA 788
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      GAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGC 848
consensus_321#1      ------------------------------------------------------------
                                                                                 

consensus_321#0      TTTACTCGAAATACTATATATATAT 873
consensus_321#1      -------------------------
                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)