These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 873 fasta sequence [TCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGAGGAACGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGATCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACACATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCTGTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAACTCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATCGCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAAGAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGCTTTACTCGAAATACTATATATATAT] [+] EMBL BI505851 [TCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGAGGAACGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGATCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACACATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATA ] [+] EMBL BI505213 [ CGTGTCGAGTAACACGGAACGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCTGTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAACTCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATCGCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAAGAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGCTTTACTCGAAATACTATATATATAT] consensusID : consensus_321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 626 fasta sequence [CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAGAAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTCACGAGTGCTTCATGGATTTTTTTAAT] [+] EMBL BI505050 [CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAGAAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAa ] [+] EMBL BI505163 [ AACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGAAAGAAAGGAGGAGGGCGGAGGAAGA GGAACGGAAGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATATGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTCACGAGTGC ] [+] EMBL BI503807 [ TATCCTTTCTTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTGGGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAATCGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTATCCCCGCGACACTTCTTTGCGCCAAAGTTGGG AAAAAAAAAAAAAAGGATGAAAATTCTTAGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCGGAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTCATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAACCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTCACAAGTGCTTCATGGATTTTTTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_321#0 ------------------------------------------------------------ consensus_321#1 CCGACAGAATCGATCGTTAATTTGACTCGTTCCACGGAAAAAAAAAAAAAAAGAAAAAAG 60 consensus_321#0 ------------------------------------------------------------ consensus_321#1 AAACGTTCCTTAACGTGGAACGCCGCGTTCTCAGCGTGAAATCGTCCGCGTTATCCTTTC 120 consensus_321#0 ------------------------------------------------------------ consensus_321#1 TTTTCTTTTTTCACATCTCTGTCGAACGATTACTCGAGTCCCATAAATACTCGAGAATTG 180 consensus_321#0 -------------------------------------TCTCGATTCGTATTATTGAAAAT 23 consensus_321#1 GGCCATTAATTCGCTTATTCCGAAATTCCCCATCATTTCTCGATTCGTATTATTGAAAAT 240 *********************** consensus_321#0 CGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTAT 83 consensus_321#1 CGGAATCGAGTTCCGTTCGGATGATCCGTTTTTACACGATCCTCTTCCTCGTATTATTAT 300 ************************************************************ consensus_321#0 CCCCGCGACACTTCTTTGCGCCAAA--------------AAAAAAAGGATGAAAATTCTT 129 consensus_321#1 CCCCGCGACACTTCTTTGCGCCAAAGTTGGGAAAAAAAAAAAAAAAGGATGAAAATTCTT 360 ************************* ********************* consensus_321#0 AGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCG 189 consensus_321#1 AGAGGACTTTGCGCGAGAAAAGGAGGGATGGAGAAAAGGGGGGAAGAAAGGAGGAGGGCG 420 ************************************************************ consensus_321#0 GAGGAAGAGGAAC-GGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTC 248 consensus_321#1 GAGGAAGANNNNNCGGAGGTGACTATACACGGTCGTTCGCAGCCCGGAGAGATTATAGTC 480 ******** ********************************************** consensus_321#0 ATGCGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAA 308 consensus_321#1 ATGTGTAACGGCGTCCACGTTAGAGATACACGTTCTCGCCTATGGAATGAGAGTGTTTAA 540 *** ******************************************************** consensus_321#0 CCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGAACCAAGTATAGTCACGGATAGTC 368 consensus_321#1 CCCCTTCCGGTATGGCCACGTATAACAGTATCTGCGNNCCAAGTATAGTCACGGATAGTC 600 ************************************ ********************** consensus_321#0 ACGAGTGCTTCATGGATTTTTTTAATATAATTGACGGTCTCTCATCGATCTTTTCACTGA 428 consensus_321#1 ACGAGTGCTTCATGGATTTTTTTAAT---------------------------------- 626 ************************** consensus_321#0 TCATCGTATAGTATGCTCCTTCGAGTCTGTATTACGTCGACTTATACGATCACACACACA 488 consensus_321#1 ------------------------------------------------------------ consensus_321#0 CATACACACACAACTCTCCCCTTTTTGAAAACATGTTATCACGTGTCGAGTAACACGGAA 548 consensus_321#1 ------------------------------------------------------------ consensus_321#0 CGCGTACAGGCTATAGTTGGCTCGTTGGCCCGATATTTCGCGCGCGATCCAATATAATCT 608 consensus_321#1 ------------------------------------------------------------ consensus_321#0 GTACATCTGTTCGCCGTGACGATTATAGTCCGGAACTAAAGTCNNNNCACCTAAGTTAAC 668 consensus_321#1 ------------------------------------------------------------ consensus_321#0 TCGTCGGCTGTAATCGGCGGCCTCCTCGATGGCTGGTCACGTAATTTTCGTAAGTCGATC 728 consensus_321#1 ------------------------------------------------------------ consensus_321#0 GCAGTCGACCGTCATTATTACGCTTACTTAAGCTACAAGTCGAGTATAATCAGCGGTAAA 788 consensus_321#1 ------------------------------------------------------------ consensus_321#0 GAAAAAAAAAAAAAAAGTGTAATATTTAGGAGTTTGTTGACTATAATCAATCTTTCGTGC 848 consensus_321#1 ------------------------------------------------------------ consensus_321#0 TTTACTCGAAATACTATATATATAT 873 consensus_321#1 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Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |