These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 522 fasta sequence [ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAAAAAAGAGAAAAAAATTTTCAATACTTAATAC] [+] EMBL BI515646 [ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTCACATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAATTATGCGTAATATATTTTCAATACTTAATAC] [+] EMBL BI514966 [ GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATA ] [+] EMBL BI512565 [ CCGTCTCATATTCGAAGAAGNCTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGACAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTAAAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTGCCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACATTAATATTGAAAAAAAAAAAAAAAA ] consensusID : consensus_368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGGTAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATTTAATTTTGATAAATGATGAATTAAACCATTCACATAGATAAATAGCATAATGTTTGTCATTTACATTGATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT] [+] EMBL BI508145 [GAAAGAGGCATTTTACCGCACCGTCTCATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATGTTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAGGACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAAGAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGGTAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATTTAATTTTGATAAATGATGAATTAAACCATTCACATAGATAAATAGCATAATGTTTGTCATTTACATTGATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_368#0 ATCGACTTGTTTCTTCTTCGCGGCGGAAAAATCGAAAGAGGCATTTTACCGCACCGTCTC 60 consensus_368#1 ---------------------------------GAAAGAGGCATTTTACCGCACCGTCTC 27 *************************** consensus_368#0 ATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATG 120 consensus_368#1 ATATTCGAAGAAGACTTATGTCGGCTCCTTTGTCAAAAGAACTTCGACAGAAATATAATG 87 ************************************************************ consensus_368#0 TTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAG 180 consensus_368#1 TTCGTTCTATGCCAATTCGCAAAGATGATGAAGTTCAGGTTGTGCGTGGACATTATAAAG 147 ************************************************************ consensus_368#0 GACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAA 240 consensus_368#1 GACAACAAGTTGGTAAAGTTGTTCAAGTATATAGGAAAAAATTTGTCATATACATAGAAA 207 ************************************************************ consensus_368#0 GAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGA 300 consensus_368#1 GAATTCAACGTGAAAAAATTAATACTGCTAATGTATATGTTGGTATTGATCCCTCTAAGG 267 *********************************************************** consensus_368#0 CAGTCATTGTAAAATTAAAAATGGATAAAGATCGTAAGAAGATTATTGACAGAAGAAGTA 360 consensus_368#1 TAAAAAAATAGCCATTTTTTTTTTATTATATTTTACTGTATATTATT--TAATTTTGATA 325 * * *** * ** * * * * ****** * ** consensus_368#0 AAGGTAGGCTTGCTGCATTAGGCAAGGATAAGGGCAAATATACTGAAGATTCAACTGCTG 420 consensus_368#1 AATGATGAATTAAACCATTCA-CATAGATAAATAGCATAATGTTTGTCATTTA--CATTG 382 ** * * ** **** ** ***** * ** * *** * ** consensus_368#0 CCATGGAAACTTCATAAATTTAAAATATAGTTTCATTTATAAAAAATTTAATAAAAACAT 480 consensus_368#1 ATATAAAAGGGTTCTCCTTTATATTTATGAATTTGACTTGCGTAGCTTTTTTACT----- 437 ** ** * * ** * *** ** * * *** ** consensus_368#0 TAATATTGAAAAAAAGAGAAAAAAATTTTCAATACTTAATAC 522 consensus_368#1 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |