These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence [GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAGGCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA] [+] EMBL BI513376 [GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAGGCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACANAGTGAAAAATAC ] [+] EMBL BI512075 [ CTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA] [+] EMBL BI515891 [ GTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACCAAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGTAACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTGCCCTTTTGTACAAAGTGAAAAATAC ] consensusID : consensus_404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [GACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATATAAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGCCTTACGATGAGATATTGTAACGTAATATTTTTGT] [+] EMBL BI512504 [GACTACAGTGGATACGACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTGCACGCGGTAAAGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTTTCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTCACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGACAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTCTTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTCTCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTCAACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATATAAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGCCTTACGATGAGATATTGTAACGTAATATTTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_404#0 GTTATGGCGGCGGTTACGGACAAGGCGGTTATGGCGGTGGCTATGATGGATACGGAGGAG 60 consensus_404#1 ------------------------------------------------------------ consensus_404#0 GCTACGATTATTACGGCGGTGGGTACGGCGGCTATGGTGGTTACGACTACAGTGGATACG 120 consensus_404#1 --------------------------------------------GACTACAGTGGATACG 16 **************** consensus_404#0 ACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTG 180 consensus_404#1 ACGGCTATGGCTATGGCGGTGGTAGTTACGATGGTGGCTACAGTGGTGGGCGCGGTGGTG 76 ************************************************************ consensus_404#0 CACGCGGTAAAGGAGGCTCAGGCTACGGCGGAAAGCAGAGGGGAGGTGGTCGTCAGAACC 240 consensus_404#1 CACGCGGTAAAGG----------------------------------------------- 89 ************* consensus_404#0 AAAGGCACCAACCCTATTAATGGAAATCATTCATTGCGACCGCAATGCAATTCGCATTGT 300 consensus_404#1 ------------------------------------------------------------ consensus_404#0 AACCGCTGGTTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTT 360 consensus_404#1 ---------TTTCCTATCTCATCACTCGTTAAATCATCATTCCATTAAACCACGTCACTT 140 *************************************************** consensus_404#0 TCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTC 420 consensus_404#1 TCAGCAAGATTTTCAACAACGCAGACTACTGCCGCAAAATAAAATGAATCATCAGGAGTC 200 ************************************************************ consensus_404#0 ACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGA 480 consensus_404#1 ACGACAAAAACTGTAATAGCTTCATATTTTGCGTCTAGCAATACATCTGTATTATGGAGA 260 ************************************************************ consensus_404#0 CAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTC 540 consensus_404#1 CAACAAAAGCAAACATATATACATATATATATTATATATATATAGGTACACAATGCTTTC 320 ************************************************************ consensus_404#0 TTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTC 600 consensus_404#1 TTCCATCTCTCGTTTACCCTTTTGTACAAAGTGAAAAATACTTCATATTTCACATTGGTC 380 ************************************************************ consensus_404#0 TCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTC 660 consensus_404#1 TCTTTCCTCATTTCATCTTATTTATCACTAATTTTTTACTGTTAGTACGTTACGTTGTTC 440 ************************************************************ consensus_404#0 AACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAA---------------- 704 consensus_404#1 AACGTAAGGCAATTTTGTAACATAGTACGTTTGAAAAATATTAACATTATATGCTGATAT 500 ******************************************** consensus_404#0 ------------------------------------------------------------ consensus_404#1 AAATATAAATACAGCATAATGATTATTTCAAATGTATGGATGATTACATCGATGATATGC 560 consensus_404#0 ---------------------------------- consensus_404#1 CTTACGATGAGATATTGTAACGTAATATTTTTGT 594 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |