These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT] [+] EMBL BI512351 [AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAA ] [+] EMBL BI516289 [ GAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT] consensusID : consensus_455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT] [+] EMBL BI516367 [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACAAGTAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT] [+] EMBL BI516377 [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_455#0 AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCG 60 consensus_455#1 ------------------------------------------------------------ consensus_455#0 ACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGAC 120 consensus_455#1 ------------------------------------------------------------ consensus_455#0 NNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAAC 180 consensus_455#1 GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGA-AGTTTTGATTAT 59 * ** ** ** * * ** * ** * * * * * * * * * * consensus_455#0 GGTGTCGTTAAACTCGAC-ATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGA 239 consensus_455#1 GATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGA 119 * * * ** ** ** * ** * ** * *** * * *** *** consensus_455#0 GAAATGGAAAACGTTCCTTGCATTTCTATTCATG-GTCGTGAACTTCATATTAACCACCG 298 consensus_455#1 TGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTT 179 * **** **** **** ** * ** * * * * ** consensus_455#0 CGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGG 358 consensus_455#1 TGCCACT--------TCTTCAAAT---TCTTAAATCATCAAATCTTTGAGCTAACG---- 224 * * ** * * ** * *** * * * * * * consensus_455#0 ATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGA 418 consensus_455#1 ----------AGATAGAATTTTTGGTCATTATTGTAGG--TAATGT-TTGTA---TCTAC 268 *** * *** * *** **** *** ** * * * * * consensus_455#0 TTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCG 478 consensus_455#1 TTAT--TATTTTACAAATTA-TGTTGGTTTTTTT----------------AGGTTTATCG 309 **** **** * *** * * * ******** * ********** consensus_455#0 TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 538 consensus_455#1 TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 369 ************************************************************ consensus_455#0 ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 598 consensus_455#1 ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 429 ************************************************************ consensus_455#0 CCAGTCCT---------------------------------------------------- 606 consensus_455#1 CCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTA 489 ******** consensus_455#0 ------------------------------------------------------------ consensus_455#1 TAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTG 549 consensus_455#0 ---------------- consensus_455#1 TACTTAGTTACCTGAT 565 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |