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Apis mellifera
cluster # 455 cluster # 455       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_455#0 length = 606 sequences # 2  
consensus_455#1 length = 565 sequences # 2  

consensusID : consensus_455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence
                              [AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT]

[+] EMBL BI512351             [AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCGACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGACNNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI516289             [                                                                                                                              GAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAACGGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAGAAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCT]


>consensus_455#0 AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCG ACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGAC NNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAAC GGTGTCGTTAAACTCGACATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGAG AAATGGAAAACGTTCCTTGCATTTCTATTCATGGTCGTGAACTTCATATTAACCACCGCG TCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGGAT GTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATT ATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCGTT GTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTAC GTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACC AGTCCT



consensusID : consensus_455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence
                              [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT]

[+] EMBL BI516367             [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACAAGTAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTGTACTTAGTTACCTGAT]
[+] EMBL BI516377             [GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGATGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTTGCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGTCATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTAGGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCC                                                                                                                                                      ]


>consensus_455#1 GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGATTATG ATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGAT GTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTTT GCCACTTCTTCAAATTCTTAAATCATCAAATCTTTGAGCTAACGAGATAGAATTTTTGGT CATTATTGTAGGTAATGTTTGTATCTACTTATTATTTTACAAATTATGTTGGTTTTTTTA GGTTTATCGTTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTA TCACGATGTACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAG CAAACAATACCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTG GCTTGTCTATAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAG TCGTGCTTGTACTTAGTTACCTGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_455#0      AACGGTATGGCACAGTCGAGCGACGTTTATCAACGGCAGCCGTTATTACCTGGTGCACCG 60
consensus_455#1      ------------------------------------------------------------
                                                                                 

consensus_455#0      ACCAAGGGTAAGGATAAGTGGTCCGGCGTGGCATCCGGCTCCGACTATTACGTGGACGAC 120
consensus_455#1      ------------------------------------------------------------
                                                                                 

consensus_455#0      NNGGACGAGAAGATCGACAGTCTTGGCCGGCATCCTGGCATACCAAATGGCTCCGGGAAC 180
consensus_455#1      GTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGA-AGTTTTGATTAT 59
                       *   ** ** ** * *  **  *   **   * *  * *  *  *  * *  *   * 

consensus_455#0      GGTGTCGTTAAACTCGAC-ATACCTGCGCCACTTCGAGAAGAACCTCGTTTTCCTAAAGA 239
consensus_455#1      GATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTGGATCAGA 119
                     * * * **  ** **  * **   *       **    *  *** * * ***     ***

consensus_455#0      GAAATGGAAAACGTTCCTTGCATTTCTATTCATG-GTCGTGAACTTCATATTAACCACCG 298
consensus_455#1      TGTAAAAAAAAAACNNNNAACATTAGTATTAATACGAAAAAAATATTACAAAAGTCATTT 179
                        *   ****         ****  **** **  *     **  * * *  *  **   

consensus_455#0      CGTCCCTCGCAATGGTGCACGAACGGGTTCCGGATCGAAATACATACGGACCGCTGCCGG 358
consensus_455#1      TGCCACT--------TCTTCAAAT---TCTTAAATCATCAAATCTTTGAGCTAACG---- 224
                      * * **        *   * **    *     ***   * *  *  *  *    *    

consensus_455#0      ATGTAGTGTTAGACAATATTGCCGCTCAGGATTGGGCCCTTAACGTGTCGGAAGTTTTGA 418
consensus_455#1      ----------AGATAGAATTTTTGGTCATTATTGTAGG--TAATGT-TTGTA---TCTAC 268
                               *** *  ***   * ***  ****      *** ** * * *   * *  

consensus_455#0      TTATGATATTGTCCAATTCAGCGATGGTTTTTATTATTTTTCATAAACATAGGTTTATCG 478
consensus_455#1      TTAT--TATTTTACAAATTA-TGTTGGTTTTTTT----------------AGGTTTATCG 309
                     ****  **** * *** * *  * ******** *                **********

consensus_455#0      TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 538
consensus_455#1      TTGTTAGACGAATATTTCTTTTGATGGGATTGCTGTACATGATGAGAAGTATCACGATGT 369
                     ************************************************************

consensus_455#0      ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 598
consensus_455#1      ACGTGACAGTACTGCCTGTTGCCAGTAAAACGTATTACTGCAGCCCAAAAGCAAACAATA 429
                     ************************************************************

consensus_455#0      CCAGTCCT---------------------------------------------------- 606
consensus_455#1      CCAGTCCTTTACTCGTTACAAAAAGGGTTTTGCAACTCATTTCTGGCTTTGGCTTGTCTA 489
                     ********                                                    

consensus_455#0      ------------------------------------------------------------
consensus_455#1      TAAACGGCAAGCATACTTATTGTGGAGATTACATTTACAGCGGTCATACAGTCGTGCTTG 549
                                                                                 

consensus_455#0      ----------------
consensus_455#1      TACTTAGTTACCTGAT 565
                                     




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)