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Apis mellifera
cluster # 465 cluster # 465       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_465#0 length = 738 sequences # 3  
 consensus_465#1 length = 448 sequences # 1  
consensusID : consensus_465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 738
fasta sequence 
                              [GCCGGATATGTCTAGTATATCTCATTATCCCTTAAAGGTGATATTTGCAATTCATTTAGTCCTAGTAACATGGGGCATTCAGGGACATTGGTGTCCAAAATCTGTAATGTTTTACAATTTCCTTTTCTTCGTCTGCTTATTGTGGGCTATTCATAATATCGAATCAGATGAACCTCTACAATTTGCACTTTTTATAAATGTACTTTCCATATTTTTTGATGTAGTAACATTAGCAGTCTATTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAACATGATTGCTCGCATCATCACAAGCATATATCTTCTACGAATAGGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAACATGACGTTTCTAAAATTCGATACGTCGAAAATTACGCGATTTCATTATCGAATCTCTCGTAGCTCGTAAGAAGTACGCGCATCTATAATCATGACATTAAAATCTATTTTATTTATTGTATATATCAGGATTTTCAATATCGATTAACAATGCAAAATAGAAAGAAATTTATGTATATAAACATGCAAATAACATTATATATCAAAACGTGAAAACGCAAAGAAATATAGAATAATAATAACAACAACAACAACAATAAAAAAAAA]

[+] EMBL BI511696             [GCCGGATATGTCTAGTATATCTCATTATCCCTTAAAGGTGATATTTGCAATTCATTTAGTCCTAGTAACATGGGGCATTCAGGGACATTGGTGTCCAAAATCTGTAATGTTTTACAATTTCCTTTTCTTCGTCTGCTTATTGTGGGCTATTCATAATATCGAATCAGATGAACCTCTACAATTTGCACTTTTTATAAATGTACTTTCCATATTTTTTGATGTAGTAACATTAGCAGTCTATTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAACATGATTGCTCGCATCATCACAAGCATATATCTTCTACGAATAGGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTACGNGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAACATGACGTTTCTAAAATTCG                                                                                                                                                                                                                                                       ]
[+] EMBL BI512948             [  CGGATATGTCTAGTATATCTCATTATCCCTTAAAGGTGATATTTGCAATTCATTTAGTCCTAGTAACATGGGGCATTCAGGGACATTGGTGTCCAAAATCTGTAATGTTTTACAATTTCCTTTTCTTCGTCTGCTTATTGTGGGCTATTCATAATATCGAATCAGATGAACCTCTACAATTTGCACTTTTTATAAATGTACTTTCCATATTTTTTGATGTAGTAACATTAGCAGTCTATTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAACATGATTGCTCGCATCATCACAAGCATATATCTTCTACGAATAGGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAACATGACGTTTCTAAAATTCGATACGTCGAAAATTACGCGATTTCATTATCGAATCTCTCGTAGCTCGTAAGAAGTACGCGCATCTATAATCATGACATTAA                                                                                                                                                                      ]
[+] EMBL BI510523             [                                                                                                                                                                                                                        TGATGTAGTAACATTAGCAGTCTATTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAACATGATTGCTCGCATCATCACAAGCATATATCTTCTACGAATAGGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAACATGACGTTTCTAAAATTCGATACGTCGAAAATTACGCGATTTCATTATCGAATCTCTCGTAGCTCGTAAGAAGTACGCGCATCTATAATCATGACATTAAAATCTATTTTATTTATTGTATATATCAGGATTTTCAATATCGATTAACAATGCAAAATAGAAAGAAATTTATGTATATAAACATGCAAATAACATTATATATCAAAACGTGAAAACGCAAAGAAATATAGAATAATAATAACAACAACAACAACAATAAAAAAAAA]




>consensus_465#0
GCCGGATATGTCTAGTATATCTCATTATCCCTTAAAGGTGATATTTGCAATTCATTTAGT
CCTAGTAACATGGGGCATTCAGGGACATTGGTGTCCAAAATCTGTAATGTTTTACAATTT
CCTTTTCTTCGTCTGCTTATTGTGGGCTATTCATAATATCGAATCAGATGAACCTCTACA
ATTTGCACTTTTTATAAATGTACTTTCCATATTTTTTGATGTAGTAACATTAGCAGTCTA
TTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAACATGAT
TGCTCGCATCATCACAAGCATATATCTTCTACGAATAGGCCAAGCAAGAGGTGGATGTTT
AGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTACGAGGACAT
ATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAACATGACGTT
TCTAAAATTCGATACGTCGAAAATTACGCGATTTCATTATCGAATCTCTCGTAGCTCGTA
AGAAGTACGCGCATCTATAATCATGACATTAAAATCTATTTTATTTATTGTATATATCAG
GATTTTCAATATCGATTAACAATGCAAAATAGAAAGAAATTTATGTATATAAACATGCAA
ATAACATTATATATCAAAACGTGAAAACGCAAAGAAATATAGAATAATAATAACAACAAC
AACAACAATAAAAAAAAA

consensusID : consensus_465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence 
                              [GGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGTCAGTAATACATTGGATACAGATGTTTTGTAGGCCTGCATTGCTTCTTCAAAATTATGCTTTAAGTAGGTGCATGAAATCATTTTTCAAATATGCATATTAGATTGCATAATTGTTTTAAATTATTGATATAGGAATATTTATTTTTCATCATAATGCTTGTCACGAGAAGGATAGATTCGTTTGTGATGCACGAATTTTACGTATCAGTCATCTTGAAATGTTTTATGTTGTTTTATCGTCTTTTGTACATATGATTTATAATTTTTAGCGGGGGTGGGGACAGACGTTCATAAACGTTTTTCTATTCTAGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAAC]

[+] EMBL BI517068             [GGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGTCAGTAATACATTGGATACAGATGTTTTGTAGGCCTGCATTGCTTCTTCAAAATTATGCTTTAAGTAGGTGCATGAAATCATTTTTCAAATATGCATATTAGATTGCATAATTGTTTTAAATTATTGATATAGGAATATTTATTTTTCATCATAATGCTTGTCACGAGAAGGATAGATTCGTTTGTGATGCACGAATTTTACGTATCAGTCATCTTGAAATGTTTTATGTTGTTTTATCGTCTTTTGTACATATGATTTATAATTTTTAGCGGGGGTGGGGACAGACGTTCATAAACGTTTTTCTATTCTAGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAAC]




>consensus_465#1
GGCCAAGCAAGAGGTGGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGTCAG
TAATACATTGGATACAGATGTTTTGTAGGCCTGCATTGCTTCTTCAAAATTATGCTTTAA
GTAGGTGCATGAAATCATTTTTCAAATATGCATATTAGATTGCATAATTGTTTTAAATTA
TTGATATAGGAATATTTATTTTTCATCATAATGCTTGTCACGAGAAGGATAGATTCGTTT
GTGATGCACGAATTTTACGTATCAGTCATCTTGAAATGTTTTATGTTGTTTTATCGTCTT
TTGTACATATGATTTATAATTTTTAGCGGGGGTGGGGACAGACGTTCATAAACGTTTTTC
TATTCTAGGCTTTGGTCGACAGGATTACGAGGACATATCTCATCCGATTCCACAAAATTC
CGATTTTGCTGGAGTTTAAAAATAGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_465#0      GCCGGATATGTCTAGTATATCTCATTATCCCTTAAAGGTGATATTTGCAATTCATTTAGT 60
consensus_465#1      ---GGCCAAGCAAGAGGTGGATGTTTAGCC----ACAATGTTCACTACAAATCCTGCAAT 53
                        **  * *       *   *  *** **    *   ** *   * *** ** *  * *

consensus_465#0      C--CTAGTAACATGGGGCATTCAGGGACATTGGTGTCCAAAATCTGTAATGTTTTACAAT 118
consensus_465#1      GGGTCAGTAATACATTGGATACAGATGTTTTGTAGGCCTGCAT---TGCTTCTTCAAAAT 110
                          ***** *    * ** ***     ***  * **   **   *  *  ** * ***

consensus_465#0      TTCCTTTTCTTCGTCTGCTT---ATTGTGGGCTATTCATA-ATATCGAATCAGATGAACC 174
consensus_465#1      TATGCTTTAAGTAGGTGCATGAAATCATTTTTCAAATATGCATATTAGATTGCATAATTG 170
                     *    ***       *** *   **  *     *   **  ****   **   ** *   

consensus_465#0      TCTACAATTTGCACTTTTTATAAATGTACTTTCCATATTTTTTGATGTAGTAACATTAGC 234
consensus_465#1      TTTTAAATTATTGATATAGGAATATTTATTTTTCATCATAATGCTTGTCACGAGAAGGAT 230
                     * *  ****     * *    * ** ** *** ***  *  *   ***    * *     

consensus_465#0      AGTCTATTTTCCAACAACGTATGCATCTGAGAAGTTTAGTGCAGCGATTATGATCTTAAA 294
consensus_465#1      AG---ATTCGTTTGTGATGCACGAATTTTACGTAT------CAGTCATCTTGAAATGTTT 281
                     **   ***        * * * * ** * *    *      ***  **  ***  *    

consensus_465#0      CATGATTGCTCGCATCATCACAAGCATATATCTTCTACGAATA--GGCCAAGCAAGAGGT 352
consensus_465#1      TATG-TTGTTT-TATCGTCTTTTGTACATATGATTTATAATTTTTAGCGGGGGTGGGGAC 339
                      *** *** *   *** **    * * ****  * **  * *    **   *   * *  

consensus_465#0      GGATGTTTAGCCACAATGTTCACTACAAATCCTGCAATGGGCTTTGGTCGACAGGATTAC 412
consensus_465#1      AGACGTTCATA---AACGTTT--------TTCTATTCTAGGCTTTGGTCGACAGGATTAC 388
                      ** *** *     ** ***         * **    * *********************

consensus_465#0      GAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAAC 472
consensus_465#1      GAGGACATATCTCATCCGATTCCACAAAATTCCGATTTTGCTGGAGTTTAAAAATAGAAC 448
                     ************************************************************

consensus_465#0      ATGACGTTTCTAAAATTCGATACGTCGAAAATTACGCGATTTCATTATCGAATCTCTCGT 532
consensus_465#1      ------------------------------------------------------------
                                                                                 

consensus_465#0      AGCTCGTAAGAAGTACGCGCATCTATAATCATGACATTAAAATCTATTTTATTTATTGTA 592
consensus_465#1      ------------------------------------------------------------
                                                                                 

consensus_465#0      TATATCAGGATTTTCAATATCGATTAACAATGCAAAATAGAAAGAAATTTATGTATATAA 652
consensus_465#1      ------------------------------------------------------------
                                                                                 

consensus_465#0      ACATGCAAATAACATTATATATCAAAACGTGAAAACGCAAAGAAATATAGAATAATAATA 712
consensus_465#1      ------------------------------------------------------------
                                                                                 

consensus_465#0      ACAACAACAACAACAATAAAAAAAAA 738
consensus_465#1      --------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)