These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 548 fasta sequence [TCGTTGGATAAAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAAGGTCTGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGAAAAGATTTTTGCAATTATATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGGATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATAATAACGTTTTGTAAAATTCTTCGATGCACGCGATATTTGTATAAAAAAAAAAAAAGTGAAAGNANACATACAGAGAGACAAATACGTACGTTAGAAGTGCAT] [+] EMBL BI503882 [TCGTTGGATAAAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAAGGTCTGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGAAAAGATTTTTGCAATTATATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGGATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATAATAACGTTTTGTAAAATTCTTCGATGCACGCGATATTTGTATAAAAAAAAAAAAAGTGAAAGNANACATACAGAGAGACAAATACGTACGTTAGAAGTGCAT] [+] EMBL BI504831 [TCGTTGGATAAAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAAGGTCTGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTTTCGGCACAAAGACATTTAGCTAGCTCCTATATCTGGAGCTATATCTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGAAAAGATTTTTGCAATTATATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGGATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATAATAACGTTTTGTAAAATTCTTCGATGCACGCGATATTTGTATAAAAAAAAA ] [+] EMBL BI509576 [TCGTTGGATAAAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAAGGTCTGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTNNNGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGAAAAGATTTTTGCAATTATATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGGATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATAATAACGTTTTGTAAAATTCTTCGATGCACGCGATATTTGTATAAAA ] consensusID : consensus_491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [AAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAACTAGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGATACACTTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGGATTTTTGCAATTACATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGAATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATATAATAACGTTTTGTAAAATCCTTCGATGCACGCGATATTTGTATAAAAAAAA] [+] EMBL BI514632 [AAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATGTATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAACTAGCGAAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCGTGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAATTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGATACACTTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGGATTTTTGCAATTACATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGAATGTTCGATCGTATCGCGATCGATCAAAGATTATATATATATATAATAACGTTTTGTAAAATCCTTCGATGCACGCGATATTTGTATAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_491#0 TCGTTGGATAAAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATG 60 consensus_491#1 ----------AAAGAACAAAGCGTCGCTTTTTATAACGTGTTGCTGCGAAAATATATATG 50 ************************************************** consensus_491#0 TATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAAGGTCTGCG 120 consensus_491#1 TATATATATGTGCGCATAGAGCTGCATACTGTATCGCATGTGCAGATGCAAA--CTAGCG 108 **************************************************** *** consensus_491#0 AAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCG 180 consensus_491#1 AAACACAGGAAAACGCAGGATGGGCACCGTACTTGATCGCGGTATCTATTCGATCAATCG 168 ************************************************************ consensus_491#0 TGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAA 240 consensus_491#1 TGGTAATTCGATCGAATCCTCGCCAATTTGTCACTTCTTTTCAACTTCAACGTGTCGAAA 228 ************************************************************ consensus_491#0 TTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTG--- 297 consensus_491#1 TTAATCCTTTCGGCACAAAGACATTTAGTTAGCTCTTATATCTGGAGCTATATCTTGATA 288 ********************************************************* consensus_491#0 -------CAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAGAAAAG 350 consensus_491#1 CACTTTGCAGGGAGACGAGATTGAGTTGAAATAAATTCAGATCGAATAGTGAAAG----G 344 ************************************************ * consensus_491#0 ATTTTTGCAATTATATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGGATGTTCG 410 consensus_491#1 ATTTTTGCAATTACATTAATCTTCCAAGCTAATCAACTGATCTATTATCGAGAATGTTCG 404 ************* ************************************** ******* consensus_491#0 ATCGTATCGCGATCGATCAAAGATTATATATATATA--ATAACGTTTTGTAAAATTCTTC 468 consensus_491#1 ATCGTATCGCGATCGATCAAAGATTATATATATATATAATAACGTTTTGTAAAATCCTTC 464 ************************************ ***************** **** consensus_491#0 GATGCACGCGATATTTGTATAAAAAAAAAAAAAGTGAAAGNANACATACAGAGAGACAAA 528 consensus_491#1 GATGCACGCGATATTTGTATAAAAAAAA-------------------------------- 492 **************************** consensus_491#0 TACGTACGTTAGAAGTGCAT 548 consensus_491#1 -------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |