These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence [ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT] [+] EMBL BI503851 [ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTT ] [+] EMBL BI509822 [ AGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTT ] [-] EMBL BI508120 [ GATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT] consensusID : consensus_494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT] [-] EMBL BI510198 [AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_494#0 ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTG 60 consensus_494#1 ------------------------------------------------------------ consensus_494#0 ATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTT 120 consensus_494#1 ------------------------------------------------------------ consensus_494#0 TACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTG 180 consensus_494#1 ------------------------------------------------------------ consensus_494#0 ATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTT 240 consensus_494#1 ------------------------------------------------------------ consensus_494#0 GCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTAC 300 consensus_494#1 ------------------------------------------------------------ consensus_494#0 GAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAG 360 consensus_494#1 ------------------------------------------------------------ consensus_494#0 ATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTA 420 consensus_494#1 ------------------------------------------------------------ consensus_494#0 GGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATT 480 consensus_494#1 ------------------------------------------------------------ consensus_494#0 CGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGC 540 consensus_494#1 ------------------------------------------------------------ consensus_494#0 ACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGA 600 consensus_494#1 -------------------------------------------------------AACGA 5 ***** consensus_494#0 TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 660 consensus_494#1 TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 65 ************************************************************ consensus_494#0 TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 720 consensus_494#1 TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 125 ************************************************************ consensus_494#0 GGTTAATAACCA-GTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGT 779 consensus_494#1 GGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCAT 185 ***** * ********************************************* * consensus_494#0 CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 839 consensus_494#1 CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 245 ************************************************************ consensus_494#0 TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 899 consensus_494#1 TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 305 ************************************************************ consensus_494#0 AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 959 consensus_494#1 AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 365 ************************************************************ consensus_494#0 TTTTGGAACCTATAA----AATTATTTGCATTTAAAATTTTATTCGTCGTTTT------- 1008 consensus_494#1 TTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACAT 425 *********** *** * * ** ** ******** * * ** consensus_494#0 ------------------------------------------------------------ consensus_494#1 ATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGT 485 consensus_494#0 ------------------------------------------------------------ consensus_494#1 CGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAA 545 consensus_494#0 ------------------------------------------------------------ consensus_494#1 TGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTA 605 consensus_494#0 ---------- consensus_494#1 GTCTCTAGAT 615 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |