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Apis mellifera
cluster # 494 cluster # 494       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_494#0 length = 1008 sequences # 3  
consensus_494#1 length = 615 sequences # 1  

consensusID : consensus_494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1008
fasta sequence
                              [ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT]

[+] EMBL BI503851             [ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI509822             [                                                                                                           AGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BI508120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT]


>consensus_494#0 ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTG ATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTT TACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTG ATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTT GCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTAC GAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAG ATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTA GGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATT CGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGC ACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGA TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC GGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTC GTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCAT CGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAA AGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGT TTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT



consensusID : consensus_494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence
                              [AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT]

[-] EMBL BI510198             [AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT]


>consensus_494#1 AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAAT AACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGG GTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCC CGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTC ATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTAC GGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAA ATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATT TACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTA TTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCA TCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGT TTTTAGTCTCTAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_494#0      ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTG 60
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      ATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTT 120
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      TACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTG 180
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      ATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTT 240
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      GCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTAC 300
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      GAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAG 360
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      ATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTA 420
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      GGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATT 480
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      CGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGC 540
consensus_494#1      ------------------------------------------------------------
                                                                                 

consensus_494#0      ACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGA 600
consensus_494#1      -------------------------------------------------------AACGA 5
                                                                            *****

consensus_494#0      TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 660
consensus_494#1      TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 65
                     ************************************************************

consensus_494#0      TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 720
consensus_494#1      TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 125
                     ************************************************************

consensus_494#0      GGTTAATAACCA-GTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGT 779
consensus_494#1      GGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCAT 185
                     ***** *      ********************************************* *

consensus_494#0      CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 839
consensus_494#1      CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 245
                     ************************************************************

consensus_494#0      TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 899
consensus_494#1      TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 305
                     ************************************************************

consensus_494#0      AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 959
consensus_494#1      AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 365
                     ************************************************************

consensus_494#0      TTTTGGAACCTATAA----AATTATTTGCATTTAAAATTTTATTCGTCGTTTT------- 1008
consensus_494#1      TTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACAT 425
                     *********** ***     *  *  ** **  ******** *   *   **        

consensus_494#0      ------------------------------------------------------------
consensus_494#1      ATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGT 485
                                                                                 

consensus_494#0      ------------------------------------------------------------
consensus_494#1      CGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAA 545
                                                                                 

consensus_494#0      ------------------------------------------------------------
consensus_494#1      TGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTA 605
                                                                                 

consensus_494#0      ----------
consensus_494#1      GTCTCTAGAT 615
                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)