These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CAGTTACTTGTGAGTGTTTTAGTCAAATTTCGTGTATATTTTCTCCTTTTTTAAATGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAA] [+] EMBL BI507592 [CAGTTACTTGTGAGTGTTTTAGTCAAATTTCGTGTATATTTTCTCCTTTTTTAAATGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAA] consensusID : consensus_509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [ACCAAAAATGGCGATCTGAAAAACAATTATTTCATCACAAATCTATCTCTGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTTTA] [+] EMBL BI505421 [ACCAAAAATGGCGATCTGAAAAACAATTATTTCATCACAAATCTATCTCTGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTTTA] consensusID : consensus_509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence [TGTTGGAGCGGCCGCGTTGCTTGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTTTA] [+] EMBL BI506698 [TGTTGGAGCGGCCGCGTTGCTTGAATATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTTTA] [+] EMBL BI507682 [ GTTGGAGATGGTGCAGTAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTCCAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAGGATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTCAAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTAAGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTGGTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAACAAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAATATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_509#1 --ACCAAAAATGGCGATCTGAAAAACAATTATTTCATCACAAATCTATCTC----TGAAT 54 consensus_509#2 -----------------------------TGTTGGAGCGGCCGCGTTGCT-----TGAAT 26 consensus_509#0 CAGTTACTTGTGAGTGTTTTAGTCAAATTTCGTGTATATTTTCTCCTTTTTTAAATGAAT 60 * * * * ***** consensus_509#1 ATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAG 114 consensus_509#2 ATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAG 86 consensus_509#0 ATTTGAAAGAAATAAAAAAAATGCAGACTATTAAATGCGTTGTAGTTGGAGATGGTGCAG 120 ************************************************************ consensus_509#1 TAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTC 174 consensus_509#2 TAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTC 146 consensus_509#0 TAGGTAAAACATGTCTGTTGATTTCATATACTACCAATAAGTTTCCATCCGAATATGTTC 180 ************************************************************ consensus_509#1 CAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAG 234 consensus_509#2 CAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAG 206 consensus_509#0 CAACAGTATTTGACAATTATGCTGTAACTGTTATGATTGGTGGTGAACCATATACTTTAG 240 ************************************************************ consensus_509#1 GATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTC 294 consensus_509#2 GATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTC 266 consensus_509#0 GATTATTTGATACAGCAGGTCAAGAAGATTATGACCGATTACGTCCTTTGAGTTATCCTC 300 ************************************************************ consensus_509#1 AAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTA 354 consensus_509#2 AAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTA 326 consensus_509#0 AAACTGACGTATTTCTTGTTTGTTTTTCGGTTGTATCTCCATCATCTTTTGAAAATGTTA 360 ************************************************************ consensus_509#1 AGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTG 414 consensus_509#2 AGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTG 386 consensus_509#0 AGGAAAAGTGGGTTCCAGAAATAACTCATCATTGCCAAAAAACTCCATTTTTGCTAGTTG 420 ************************************************************ consensus_509#1 GTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAAC 474 consensus_509#2 GTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAAC 446 consensus_509#0 GTACTCAAATTGATTTGAGAGATGATGCAGCAACTATTGAAAAACTTGCAAAAAATAAAC 480 ************************************************************ consensus_509#1 AAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAAT 534 consensus_509#2 AAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAAT 506 consensus_509#0 AAAAGCCTATATCGGCTGAACAAGGTGAAAAACTCGCCAAGGAACTCAAAGCAGTGAAAT 540 ************************************************************ consensus_509#1 ATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTT 594 consensus_509#2 ATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAATTT 566 consensus_509#0 ATGTGGAATGTAGTGCTCTTACACAAAAAGGTTTAAAAAACGTATTCGACGAAGCAA--- 597 ********************************************************* consensus_509#1 TA 596 consensus_509#2 TA 568 consensus_509#0 -- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |