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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence
[AGATGGTGCTGATTCCCATGTTTTTTTTTTTCAATCCTTCTCTTTCTCTCATTTACTCGATTATTTTGTATTTTATCTATAATTCAGTAAACCGCATGTGTTCTCGACCAACCGAAGAATCCTCGATGTCATAGATTCAAGGACAAAACTGGACAAAGGTTAGTGTGTTTCGATCTTAAAAATTCTAGACAAAGGAAAGAGCGACGTATTTGCGTTTGACGAGTTGAAACGTGCGGACGTTTGTGCTTCATAAGTGAAAAGGATAACAATATTAATTCAAAATGCAGAAATTGATATTTCTAACAGTTCTCTTCTTTTGTGGAGTCATAGGAGAAAATTGTGAAGATAATAAT-AAAAAAGAAGAATGTGCTTTAGCACCTTTAGATCAAGACAAGAATTGGAAATCAGCTTCTACCATTTATGATTTTCATGCTAAAGATATCCATGGAAATGACGTGTCATTGAATAAATATCGTGGACATGTTTGTATAATTGTTAATGTTGCTAGTAATTGTGGACTTACAGATACAAATTACAGAGAACTTGTACAATTATATGAAAAATACAATGAAAAAGAAGGTTTAAGGATTTTAGCATTTCCATCAAATG]
[+] EMBL BI503509 [AGATGGTGCTGATTCCCATGTTTTTTTTTTTCAATCCTTCTCTTTCTCTCATTTACTCGATTATTTTGTATTTTATCTATAATTCAGTAAACCGCATGTGTTCTCGACCAACCGATGAATCCTCGATGTCATAGATTCAAGGACAAAACTGGACAAAGGTTAGTGTGTTTCGATCTTAAAAATTCTAGACAAAGGAAAGAGCGACGTATTTGCGTTTGACGAGTTGAAACGTGCGGACGTTTGTGCTTCATAAGTGAAAAGGATAACAATATTAATTCAAAATGCAGAAATTGATATTTCTAACAGTTCTCTTCTTTTGTGGAGTCATAGGAGAAAATTGTGAAGATAATAATAAAAAAAGAAGAATGTGCTTTAGCACCTTTAGATCAAGACAAGAATTGGAAATCAGCTTCTACCATTTATGATTTTCATGCTAAAGATATCCATGGAAATGACGTGTCATTGAATAAATATCGTGGACATGTTTGTATAATTGTTAATGTTGCTAGTAATTGTGGACTTACAGATACAAATTACAGAGAACTTGTACAATTATATGAAAAATACAATGAAAAAGAAGGTT ]
[+] EMBL BI513469 [ AGAATCCTCGATGTCATAGATTCAAGGACAAAACTGGACAAAGGTTAGTGTGTTTCGATCTTAAAAATTCTAGACAAAGGAAAGAGCGACGTATTTGCGTTTGACGAGTTGAAACGTGCGGACGTTTGTGCTTCATAAGTGAAAAGGATAACAATATTAATTCAAAATGCAGAAATTGATATTTCTAACAGTTCTCTTCTTTTGTGGAGTCATAGGAGAAAATTGTGAAGATAATAAT AAAAAAGAAGAATGTGCTTTNNNACCTTTAGATCAAGACAAGAATTGGAAATCAGCTTCTACCATTTATGATTTTCATGCTAAAGATATCCATGGAAATGACGTGTCATTGAATAAATATCGTGGA ]
[+] EMBL BI503172 [ CGATGTCATAGATTCAAGGACAAAACTGGACAAAGGTTAGTGTGTTTCGATCTTAAAAATTCTAGACAAAGGAAAGAGCGACGTATTTGCGTTTGACGAGTTGAAACGTGCGGACGTTTGTGCTTCATAAGTGAAAAGGATAACAATATTAATTCAAAATGCAGAAATTGATATTTCTAACAGTTCTCTTCTCTTGTGGAGTCATAGGAGAAAATTGTGAAGATAATAAT AAAAAAGAAGAATGTGCTTTAGCACCTTTAGATCAAGACAAGAATTGGAAATCAGCTTCTACCATTTATGATTTTCATGCTAAAGATATCCATGGAAATGACGTGTCATTGAATAAATATCGTGGACATGTTTGTATAATTGTTAATGTTGCTAGTAATTGTGGACTTACAGATACAAATTACAGAGAACTTGTACAATTATATGAAAAATACAATGAAAAAGAAGGTTTAAGGATTTTAGCATTTCCATCAAATG]
consensusID : consensus_548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[ATGAACAGAAATATTTATTTGTATATAATCTTTTAATTTTCAATCAAAATTTCATTATATAGAAAATAATTTTAAATTATTAATGTTAAATTCTGTTCATATAAAGTAAAGAAAATAACAGCAAAAATTCATTCTTATAACAATCTTAAAAATAATCTTAATAACAATTAATATATAATAAGAGTATTACAGGTGATTAAAACTGAATCAAGCAAGTAAAATAATTATAAGTGCAATTAAAAATATTTCTTCAACTCAGATTCCATTTGCAAAGGATCAACAGTTGGTGCAAATCGAGAAACAACTTTTCCTTCTTTGTTAATAATAAATTTACTAAAATTCCATTTTATATCGTCAGTTATGAATCCATTTGCTTGTGTCTTCAACCACTTCCATAATGGATGTGCATTATCTCCATTAACATTAATTTTTTCAAATAGATCAAAAGTAACATTATATTTTTTGACAAACTCTAAAATTTCTACAGNGNTTCCTGGTTCTTGACCGCCAAACTCATTTGATGGAAATGCTAAAATCCTT]
[+] EMBL BI511881 [ATGAACAGAAATATTTATTTGTATATAATCTTTTAATTTTCAATCAAAATTTCATTATATAGAAAATAATTTTAAATTATTAATGTTAAATTCTGTTCATATAAAGTAAAGAAAATAACAGCAAAAATTCATTCTTATAACAATCTTAAAAATAATCTTAATAACAATTAATATATAATAAGAGTATTACAGGTGATTAAAACTGAATCAAGCAAGTAAAATAATTATAAGTGCAATTAAAAATATTTCTTCAACTCAGATTCCATTTGCAAAGGATCAACAGTTGGTGCAAATCGAGAAACAACTTTTCCTTCTTTGTTAATAATAAATTTACTAAAATTCCATTTTATATCGTCAGTTATGAATCCATTTGCTTGTGTCTTCAACCACTTCCATAATGGATGTGCATTATCTCCATTAACATTAATTTTTTCAAATAGATCAAAAGTAACATTATATTTTTTGACAAACTCTAAAATTTCTACAGNGNTTCCTGGTTCTTGACCGCCAAACTCATTTGATGGAAATGCTAAAATCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_548#0 ------AGATGGTGCTGATTCCCATGTTTTTTTTTTTCAATCCTTCTCTTTCTC-TCATT 53
consensus_548#1 ATGAACAGA-AATATTTATTTGTATATAATCTTTTAATTTTCAATCAAAATTTCATTATA 59
*** * * *** ** * * **** ** ** * ** * **
consensus_548#0 TACTCGATTATTTTGTATTTT--ATCTATAATTCAGTAAACCGCATGTGTTCTCGACCA- 110
consensus_548#1 TAGAAAATAATTTTAAATTATTAATGTTAAATTCTGTTCATATAAAGTAAAGAAAATAAC 119
** ** ***** *** * ** * ***** ** * * ** * *
consensus_548#0 ACCGAAGAATCCTCGATGTCATAGATTCAAGGACAAAACTGGACAAAGGTTAGTGTGTTT 170
consensus_548#1 AGCAAAAATTCATTCTTATAACAATCTTAAAAATAAT-CTTAATAACAATTAATATATAA 178
* * ** * ** * * * * * * ** * ** ** * ** *** * * *
consensus_548#0 CGA---TCTTAAAAAT--TCTAGACAAAGGAAAG--AGCGACGTATTTGCGTTTGACGAG 223
consensus_548#1 TAAGAGTATTACAGGTGATTAAAACTGAATCAAGCAAGTAAAATAATTATAAGTG-CAAT 237
* * *** * * * * ** * *** ** * ** ** ** * *
consensus_548#0 TTGAAACGTGCGGACGTTTGTGCTTCATAAGTGAAAAGGATAACAATATTAATTCAAAAT 283
consensus_548#1 TAAAAATATTTCTTCAACTCAGATTC-CATTTGCAAAGGAT--CAACAGTTGGTGCAAAT 294
* *** * * * * *** * ** ******* *** * * * ****
consensus_548#0 GCAGAAATTGATATTTCTAACAGTTCTCTTCTTTTGTGGAGTCATAGGAGAAAATTGTGA 343
consensus_548#1 CGAGAAACAACTTTTCCT-----TCTTTGTTAATAATAAATTTACT----AAAATTCCAT 345
***** * ** ** * * * * * * * * ******
consensus_548#0 AGATAATAATAAAAAAGAAGAATGTGCTTTAGCACCTTTAGATCAAGACAAGAATTGGAA 403
consensus_548#1 TTTATATCGTCAGTTATGAATCCATTTGCTTGTGTCTTCA-ACCACTTCCATAAT-GGAT 403
** * * * * * * * *** * * ** * * *** ***
consensus_548#0 ATCAGCTTCTACCATTTATGATTTTCATGCTAAAGATATCCATGGAAATGACGTGTCATT 463
consensus_548#1 GTGCATTATCTCCATTAACATTAATTTTTTCAAATAGATCAAAAGTAACATTATATTTTT 463
* * ***** * * * * *** * *** * * ** * * **
consensus_548#0 GAATAAATATCGTGGACATGTTTGTATAATTGTTAATGTTGCTAGTAATTGTGGACTTAC 523
consensus_548#1 TGACAAACTCTA-----AAATTTCTACAGNGNTTCCTGGTTCTTG-ACCGCCAAACTCAT 517
* *** * *** ** * ** ** * ** * * *** *
consensus_548#0 A-GATACAAATTACAGAGAACTTGTACAATTATATGAAAAATACAATGAAAAAGAAGGTT 582
consensus_548#1 TTGATGGAAATGCTAAAATCCTT------------------------------------- 540
*** **** * * ***
consensus_548#0 TAAGGATTTTAGCATTTCCATCAAATG 609
consensus_548#1 ---------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |