These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 876 fasta sequence [GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAAATGATTTCCGTCATCTTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCAGGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAGNTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAGTTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC] [+] EMBL BI502916 [GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAAATGATTTCCGTCATCTTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCAGGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTAT ] [+] EMBL BI516548 [ AATCATGGTCTGCATCCTTGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGACGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAGNTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAGTTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC] [+] EMBL BI516369 [ AATCATGGTCTGCATCCTCGTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCACGAGGCATAGCTGTACCGACCGCGTATCCCAGCTGGGTGTTGGCTATAGCGGTCGTCATCATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTCAAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACCAAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCCGAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAG ] consensusID : consensus_584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATAACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAACTCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAGAATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAACGTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATACATCCATGGTTAGGCGGTATAGGGATAGCATCGTGCATCGTCACCTTCTTCGTAGCACTTTATTACAA] [+] EMBL BI508914 [TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATAACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAACTCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAGAATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAACGTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAGAACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTGGGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTTCTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTGGGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATACATCCATGGTTAGGCGGTATAGGGATAGCATCGTGCATCGTCACCTTCTTCGTAGCACTTTATTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_584#0 ------------------------------------------------------------ consensus_584#1 TATCGAGAAAAAAAACTCGTTCCGATCTGCGAATTCTTCCCCCTCCCCCCTCCCCAAATA 60 consensus_584#0 ------------------------------------------------------------ consensus_584#1 ACGAAGGAGAAAAATAAAGAAGGAGAGAAAGAGAGAGAGAGAAAAAGGGAAGAATCGAAC 120 consensus_584#0 ------------------------------------------------------------ consensus_584#1 TCGTCTTTTCGCCTTTGGAAACAAAGAGGTCCGAAGTGAAGCATGGTAGTCAAGAACGAG 180 consensus_584#0 ------------------------------------------------------------ consensus_584#1 AATACGAGAAATGGGCATGAGCTGGCTCCGTTGAACGAGGAACGTCAGGCAGGGCAGAAC 240 consensus_584#0 GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG 60 consensus_584#1 GTGACAATCGTGGTAACCGGGAATCAAAATGCTGCTGGCAGTCAAGAGACCAAGGAGGAG 300 ************************************************************ consensus_584#0 AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATTGGTTACAGCGTG 120 consensus_584#1 AACAGGGCGGAATGGAGCGGGAAGATGCAATTTTTCCTCAGTATTATCGGTTACAGCGTG 360 *********************************************** ************ consensus_584#0 GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT 180 consensus_584#1 GGGCTTGGGAATATATGGAGATTCCCTTACCTGTGCCAACAGAACGGAGGAGGTGCCTTT 420 ************************************************************ consensus_584#0 CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCCCTCTTTTTAATCGAGCTG 240 consensus_584#1 CTCATCCCCTTTTTCGTGATGCTAATCCTAGAGGGTGTACCTCTCTTTTTAATCGAGCTG 480 ***************************************** ****************** consensus_584#0 GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGCATGGAA-ATGATTTCCGTCATC 299 consensus_584#1 GGTCTCGGTCAACGCATGCGACAGGGCGCCCTTGGTGTATGGAACACGATA-----CATC 535 ************************************* ****** * *** **** consensus_584#0 TTTGTTTATGGCCACGAAAAATTCACGAAAGATATAGAAGAGATGACAGGATACAGACCA 359 consensus_584#1 CATGGTTA-GGCGGTATAGGGATAGCATCGTGCATCG------TCACCTTCTTCGTAGCA 588 ** *** *** * * * ** * * ** * * * ** consensus_584#0 GGGGCGTATTGGCAATTCACCTGGCGATTTCTCGCTCCTATAATCATGGTCTGCATCCTT 419 consensus_584#1 ----CTTTATTACAA--------------------------------------------- 599 * * * *** consensus_584#0 GTCTCCAGTATAATCTCCATGGTTGTGAAAAAGCCTCAATATTCCGCGTGGGACGCGTCA 479 consensus_584#1 ------------------------------------------------------------ consensus_584#0 CGGGGCATAGCTGTACCGACCGCGTATCCCGGCTGGGTGTTGGCTATAGCGGTCGTCATC 539 consensus_584#1 ------------------------------------------------------------ consensus_584#0 ATTTTTGCGGGCATCGCGCCAATACCGATTGTATTCCTTTTGAGGCGGTTCCAATGCGTC 599 consensus_584#1 ------------------------------------------------------------ consensus_584#0 AAGTTGGACGTTGACATTCACCAGGGCAGCATACGACGTATCGATACCACCGTTTCTACC 659 consensus_584#1 ------------------------------------------------------------ consensus_584#0 AAAGAAATGATGGGAGATGTCGATTTGGACGAGTACCACGATCGCCTCGAAGATTTTCCC 719 consensus_584#1 ------------------------------------------------------------ consensus_584#0 GAGGAGGACGAAGNCGTGAACAGCGATGACGACAACAACAGCGCCCCGCCGATAACGAAG 779 consensus_584#1 ------------------------------------------------------------ consensus_584#0 NTCGTCCCTAACAAACTTCAGGGTAAACCGTTCAAAATGGAAGTGATGGACTTTTAAAAG 839 consensus_584#1 ------------------------------------------------------------ consensus_584#0 TTGTCAGNTTCGTCGACTTTTGTCGTATCGTTTCACC 876 consensus_584#1 ------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |