These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [ATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGAGGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTTATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA] [+] EMBL BI516807 [ATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAG ] [+] EMBL BI513431 [ CTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGACACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCTCAGGTGTTACGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAATAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATCATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCAGTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAAGGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGAGGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTTATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA] consensusID : consensus_590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATACCACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAATTCCTTGTTTCTGGGAATATTTCCATTATAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT] [+] EMBL BI507912 [TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATACCACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAATTCCTTGTTTCTGGGAATATTTCCATTATAGGAATGTGAGCACGAACTAACGCAGAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAATAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT] consensusID : consensus_590#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [GAGTTGCAGATGAGCATGAAGTCGGAAATGGAAGTGGCTATGAAACTGTTGGAGAAAGATATTCACGAGAAACAAGACACGATTATATCGTTGCGACGGCAACTCGATGAGATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGTGATCATTAGTATACCTTTTCACCCGTGTTAATCGCGACGAGGGATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTTTTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA] [+] EMBL BI504859 [GAGTTGCAGATGAGCATGAAGTCGGAAATGGAAGTGGCTATGAAACTGTTGGAGAAAGATATTCACGAGAAACAAGACACGATTATATCGTTGCGACGGCAACTCGATGAGATCAAATTAATTAACTTGGAAATGTATAAAAAGCTACAGGTGATCATTAGTATACCTTTTCACCCGTGTTAATCGCGACGAGGGATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTTTTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_590#0 ------------------------------------------------------------ consensus_590#1 TCTTTCCACCTCTGCTTTTAATATCCAGCTTTTCAGATTTTTAGCCAAGATTTGATATAC 60 consensus_590#2 ------------------------------------------------------------ consensus_590#0 -----------------------------------------------------ATCAAAT 7 consensus_590#1 CACTCAGACAGTTTATGCTTCCCCTTCGCCAAGCTGGGGGTCGGGGGTGGCTTTCGAAAT 120 consensus_590#2 -------------------------------------------------GAGTTGCAGAT 11 * ** consensus_590#0 TAAT-TAACT-TGGAAATGTATAAAAAGCTACAGGAATGT--GAGCACGA-ACTAACGCA 62 consensus_590#1 TCCT-TGTTTCTGGGAATATTTCCA---TTATAGGAATGT--GAGCACGA-ACTAACGCA 173 consensus_590#2 GAGCATGAAGTCGGAAATGGAAGTG--GCTATGAAACTGTTGGAGAAAGATATTCACG-A 68 * ** *** ** * *** *** * ** * * *** * consensus_590#0 GAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAA 122 consensus_590#1 GAAAGGGGAAATGGTGAGCCGGCTCCACGCCAAGACGAATCAAATAGGGAAGATCCTGAA 233 consensus_590#2 GAAACAAGACACGATTATATCGTT----GCGACGGCAACTCGATGAGATCAAAT--TAAT 122 **** ** * * * * * * ** * * * * ** * ** * ** * * consensus_590#0 TAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGTGGAGAATATTCGTAGCCCGACGAC 182 consensus_590#1 TAATCTCGAGAAGTGCAACCACATGAAAAAGGAGGT------------------------ 269 consensus_590#2 TAACTTGGAAATGTATAA------AAAGCTACAGGTGATCATTAGT-ATACCTTTTCACC 175 *** * ** * ** ** ** **** consensus_590#0 ACCGAGCAGTGTAACGAAATCTATCCTAAATAAGACCAGTCCCACCTCGCCCAGGTGTTA 242 consensus_590#1 ------------------------------------------------------------ consensus_590#2 CGTGTTAATCGCGACGAGGG--ATGCTTTATAGATCGACGTACTTCTCTTCAATGTCTTT 233 consensus_590#0 CGCTGACAATGCAGTTGATTATCAACAACAACAACAACAACAACAGCATCCCCAGTCCAA 302 consensus_590#1 ------------------------------------------------------------ consensus_590#2 TTTTTTTCTTCTTCTCCCTCGTACGAAAGAAGAAA------------------------- 268 consensus_590#0 TAATCAGCAACAATCGGCTAACAATCTGCAAAAGTCGACTAATAACCAGCAGCAAATATC 362 consensus_590#1 ------------------------------------------------------------ consensus_590#2 ------------------------------------------------------------ consensus_590#0 ATCCATTAACCATAATCAACAATCCAATAACGTCATTCAACAAAAGTCTGTCGTTAAGCA 422 consensus_590#1 ------------------------------------------------------------ consensus_590#2 ------------------------------------------------------------ consensus_590#0 GTTAGATTCTCCTAACAATAATAACAAACAAACGAGGGTAGAAAATGGCGCCAAGTGCAA 482 consensus_590#1 ------------------------------------------------------------ consensus_590#2 ------------------------------------------------------------ consensus_590#0 GGCGAAGCCTGATAAGAGAGAGCAGAGTAACGGCGAGGTTTCCACGGGGGAATCCGGAGA 542 consensus_590#1 ------------------------------------------------------------ consensus_590#2 ------------------------------------------------------------ consensus_590#0 GGAACGATCGACCGCATAAATAAAAAAAATAAACGTTGTCTTTCTAGAGAAATGNNTTTT 602 consensus_590#1 ------------------------------------------------------------ consensus_590#2 ------------------------------------------------------------ consensus_590#0 ATACTTATGCATCTTCTAAACTATCACTACGTTTAAATAATATCTCGAGTAA 654 consensus_590#1 ---------------------------------------------------- consensus_590#2 ---------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |