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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_64#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence
[ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCATTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCATCACCGATTCAGGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG]
[+] EMBL BE844495 [ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCATTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCATCACCGATTCAGGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG]
[+] EMBL BI511460 [ GCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACA ACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAGCAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAACGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTC ]
[+] EMBL BI516440 [ CACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTGAGATGGAGGCAAGACGTATCTGCGTATGAATTGTCGGCTGACAAATCCGTGCTCGTCTTGTCTCTCCTCGTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGTAATCTCTTCCGGTGAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGCCCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTTACGTGTAATGAATATGATATTTCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACGCATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATATACCATTGATTCTATTAAATCATC ]
consensusID : consensus_64#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 603 fasta sequence
[GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCGAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAGTCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAAAAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCACCCAAAAAAAA]
[+] EMBL BI946510 [GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCAAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAGTCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAAA ]
[+] EMBL BI946472 [ ACACCCGAAGACCCACTAACCAGTGAATATACCTCTACTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAAAATGTAGACGAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGAGCTTGAACAATCCGGA ]
[+] EMBL BI511826 [ GAGACGGATTCGGTGCGGAGCGCGACAGTTTACCTGCACCCTGCGGGGTCGGTGCTTGAACAATCCGTACGCAACCATAATCTGATTTGATTAGAGAGTTCGAAATTTCTTCACACATTTGAAGTATTTAAGAAAAGCACTTCGAGTTATATGCAGTAGTTTAGAGCAGATTCGTAGTTTGAAGTCGAATAAATCGTCGGCTTCGTCTTGTCGGAACGAATACTCTACCACAAGAACATATGGAACTTTGGAATCGAGAACGAAAAATAAAATCAAAACGGAACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCACCCAAAAAAAA]
consensusID : consensus_64#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 528 fasta sequence
[TTCAAATATCAAGCTTTTTCATCACCGATTCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAGTTCATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCTATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGATATAAATTTGCAGTCAGCTATTAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGTAATAATCACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGTGAAAAGTATAAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATAAATATATATATATATCT]
[+] EMBL BI515714 [TTCAAATATCAAGCTTTTTCATCACCGATTCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAGTTCATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCTATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGATATAAATTTGCAGTCAGCTATTAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGTAATAATCACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGTGAAAAGTATAAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATATATATATATATATATCT]
[+] EMBL BI504854 [ AAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCCACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTAGTTTGTTTTTCTATTTTCTACTGGTTGCAAAGTTTCGCTTATTTCCTTTTTTTTTTATACATACATACATATAAATAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_64#0 ACGGGAAATAAAAGAAAAAAGGAACGTAAAAAGGCTCGGAAAAAAAAAAACGGATC---A 57
consensus_64#1 -------------------GTGAACACCCGAAGACCCACTAACCAGTGAATATACCTCTA 41
consensus_64#2 ------------------------------------------------------------
consensus_64#0 TTTTCCTAGCGTCGAGCAGCATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCA 117
consensus_64#1 CTTCTTTTACGTGGTCCACGAGGCTGCTGACAATACGACGTGAA---AATGTAGACGAGA 98
consensus_64#2 ------------------------------------TTCAAATATCAAGCTTTTTCATCA 24
* * * *
consensus_64#0 CCACCACCACCACCGAGCTCTTCTCTCCATCTTTTTACCTTTTTGGGTGCCGTGATAGTT 177
consensus_64#1 CGGAT-TCGGTGCGGAGCGCGACAGTTTACCTG--CACCCTGCGGGGT----CGGTGCTT 151
consensus_64#2 CCGAT-TCAGGGAAAGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAA-ATGAAGTTC 82
* * ** * * ** * * *
consensus_64#0 AAAA-CACCATCTGAAGATAGACTCGAGGTAATGTTGATCACGTCGTG-AGATGGAGGCA 235
consensus_64#1 GA----ACAATCCGTACGCAACCATAATCTGAT-TTGATTA----GAG-AGTTCGA---A 198
consensus_64#2 ATCTTCGCCTGCTATTGAAAACCTACGTTTAGAATTTAACACGTTAGGCAGTCTGTGTCT 142
* * * * * ** * * * ** *
consensus_64#0 AGACGTATCTGCGTATGAATTGTCGGC--TGACAAATCCGTGCTCGTCTTGTCTCTCCTC 293
consensus_64#1 ATTTCTTCACACATTTGAAGTATT-----TAAGAAA----AGCACTTCGAGTTATATGCA 249
consensus_64#2 ATATTTCGAAATAACAGATTTTCCTTCTCTGAAAGATCCCTAAATGTCCAGTTATTGGAT 202
* * ** * * * * * ** **
consensus_64#0 GTGTTTTGCTTCGACAATAACGTTATTACCGACCGTCTTCACCGT--AATCTCTTCCGGT 351
consensus_64#1 GTAGTTTAG---AGCAGATTCGTAGTTTGAAGTCGAATAAATCGTC-GGCTTCGTCTTGT 305
consensus_64#2 ATAAATTTGCA-GTCAGCTAT-TAGCTACAATACGCACAACCTTTCTAAAAATCTTCTGT 260
* ** ** * * ** * * **
consensus_64#0 GAGAATTGTTGAACATCCAGTATTACCTGTGGAGATCAGAGCAGAACAATTGAGACAGGC 411
consensus_64#1 CGGAAC----GAATACTC--TACCAC-----AAGAACATA-TGGAACTTTGGAGTCGAGA 353
consensus_64#2 AATAAT-----CACTTTAATAAGTATTTGACAGAAAAAAAGTAAAACAGT-GAAAAGTAT 314
** * * * * * * *** * **
consensus_64#0 CCGAAGTTTAAAAGGTCGAACAGGGAGATATCTTTTATTGGAGCACGATGTT-ACGTGTA 470
consensus_64#1 ACGAAAAATAAAA--TCAAAACGGAACG-----------GGAAAAAAAAGAA-AAAAGGA 399
consensus_64#2 AAAAAAAAAAATCCGTTCTTCCGGTAAATTCGAGTTATCCATATGCAAAATAGACGAGCC 374
** ** * ** * * * *
consensus_64#0 ATGAA-TATGATATT-TCAAACAGGCAATAAGAGAGATCTGAACGACCGTTGAGAAAACG 528
consensus_64#1 ACG---TAAAAAGGC-TCGGAAAAAAAAAAACGGATCACTTTCCTAGCGTCGAGCA---G 452
consensus_64#2 ACGAGGCTCGTTGGCGTTTAAAAAATATGAATACATATTAGAAAAAAATGTAGAAAAGTA 434
* * * * * * ** * * *
consensus_64#0 CATCCATTCCACATCCGATTCTGGCCTCGCATCTTATAATAT-ACCATTGATTCTATTAA 587
consensus_64#1 CATCGAGCGAGTCCTTTGCTCGGGACTCACCACAACCACCACCACCACCGAGCTCTTCTC 512
consensus_64#2 GTTTGTTTTTCTATTTTCTACTGNTTGCAAAGTTTCGCTTATTTCCTTT--TTTTTTTAT 492
* * * * * ** *
consensus_64#0 ATCATCATTTATTGCGAAAATTTCAAATATCAAGCTTTTTCAT-CACCGATTCAGGGGAA 646
consensus_64#1 TCCATCTTTTTACCT-----TTTTGGGTGCCGTGATAGTTAAAACACCATCTGAAGATAG 567
consensus_64#2 ACATACATACATATAAATAAATATATATATATATCT------------------------ 528
* * * * *
consensus_64#0 AGGCTAATTCTTTTGAATTAACGCCGCTTTAAGCAAATGAAG 688
consensus_64#1 ACTCGAGGTAATGTTGATCA-CGTCACCCAAAAAAAA----- 603
consensus_64#2 ------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |