These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGATGCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTATTAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG] [+] EMBL BI504872 [AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGATGCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAA ] [+] EMBL BI509816 [ ATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTATTAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG] consensusID : consensus_768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATTACTTCGATTTTTCTTAAGATATACCGCAGACAAACGCACAAAAGCAATATCGGCCGACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAGCGGGGTCGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCGTCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAAACAATTGACCAAACCGACCGCGTCTTAAAATACACGGCATTGTCAGAGAATCAGAAAGATGCTTGGAATGTTCGACCTCTTATCGTGTCCACTGATGGTGTTATTATTCTTCCTTTTCATCAATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAATGAGCTCGTCAGGAAGATATATTTTTAATAAACTTTCGTGAAAGAATTTAAATTATTCAATGATAATTCATAATATTGATATTCATATGAAAAAATTAATATCTAAAATTCTTAAT] [+] EMBL BI507270 [TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATTACTTCGATTTTTCTTAAGATATACCGCAGACAAACGCACAAAAGCAATATCGGCCGACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAGCGGGGTCGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCGTCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAAACAATTGACCAAACCGACCGCGTCTTAAAATACACGGCATTGTCAGAGAATCAGAAAGATGCTTGGAATGTTCGACCTCTTATCGTGTCCACTGATGGTGTTATTATTCTTCCTTTTCATCAATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAATGAGCTCGTCAGGAAGATATATTTTTAATAAACTTTCGTGAAAGAATTTAAATTATTCAATGATAATTCATAATATTGATATTCATATGAAAAAATTAATATCTAAAATTCTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_768#0 AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGAT 60 consensus_768#1 --------------TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATT 46 ** *** ** ** ** * * *** ** ** *** ** * consensus_768#0 GCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGC 120 consensus_768#1 ACT----TCGATTTTTCTTAAGATATACCGCAGACAAACGC-ACAAAAGCAATATCGGCC 101 * * * * * ** * *** * * * **** * **** * consensus_768#0 GTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGA 180 consensus_768#1 G--------ACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAG----CGGGGT 149 * * ** ** ** * **** * * * ** ** * * * consensus_768#0 AGACGGCGTTCTTAGATTGACGCGCATGCGC--ATTACGTTCTACTTGACGACGCTCTTC 238 consensus_768#1 CGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCG 209 * ** ** * ***** * **** *** ** *** consensus_768#0 TTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTG 298 consensus_768#1 TCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAA--------ACAATT 261 * * ** ** ** ** * ** * * * * ** * * * consensus_768#0 AAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACC 358 consensus_768#1 GACCAAACCGACCGCGT-CTTAAAATACACGGCAT--TGTCAGAGAATCAGAAAGATGCT 318 * * * ** ** *** * *** *** *** ** * * * * consensus_768#0 AAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGA 418 consensus_768#1 TGGAATGTTCGACCTCTTAT-CGTGTCCACTGATG-GTGTTATTATTCTTCCTTTTCATC 376 *** * *** * * * * * * ** * * * ** * * consensus_768#0 AGTTTGATATTTAAAATACATAAAAATGACAGTTTACAT--AGATGATTGTACCTATACT 476 consensus_768#1 AATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAAT 436 * * ** ** * **** ** * ** *** * * ** ** * * consensus_768#0 GTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAG 536 consensus_768#1 GAGCTCGTCAGGAAGATATATTT----TTAATAAA----CTTTCGTGAAAGAATTTAAAT 488 * ** * * * *** * *** *** *** * * *** * * * * consensus_768#0 AAAT--GCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTAT 594 consensus_768#1 TATTCAATGATAATTCATAATATTGATATTCATATGAAAAA-ATTAATATCTAAAATTCT 547 * * ** *** * ** * * *** * * * *** **** * * * * consensus_768#0 TAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG 640 consensus_768#1 TAAT------------------------------------------ 551 ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |