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Apis mellifera
cluster # 811 cluster # 811       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_811#0 length = 750 sequences # 2  
consensus_811#1 length = 545 sequences # 1  

consensusID : consensus_811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence
                              [ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT]

[+] EMBL BI507261             [ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI504785             [                                                                                                                                          GTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATATTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT]


>consensus_811#0 ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAA AATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGT CGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACC GTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAA AGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAG AAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCC GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCT CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC CGCAAGTACATGCATGTCAGTATTTTACAT



consensusID : consensus_811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BI507107             [AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA]


>consensus_811#1 AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACT TTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTC TTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAA AAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCT CTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGT GCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCAT AATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTAT AATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTA TAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATAT ATATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_811#0      ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAA 60
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      AATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGT 120
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      CGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACC 180
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      GTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAA 240
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      AGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAG 300
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      AAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCC 360
consensus_811#1      --------------------AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCC 40
                                         ***************** **********************

consensus_811#0      GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 420
consensus_811#1      GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 100
                     ************************************************************

consensus_811#0      TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 480
consensus_811#1      TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 160
                     ************************************************************

consensus_811#0      TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 540
consensus_811#1      TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 220
                     ************************************************************

consensus_811#0      CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCT 600
consensus_811#1      CTCTCTCTCTCTCTCTCTCTCTCT--------------TTCGTTCTTTCTCTCTTTCTCT 266
                     ************************              ****   ***************

consensus_811#0      CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 660
consensus_811#1      CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 326
                     ************************************************************

consensus_811#0      GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 720
consensus_811#1      GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 386
                     ************************************************************

consensus_811#0      CGCAAGTACATGCATGTCAGTATTTTACAT------------------------------ 750
consensus_811#1      CGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACA 446
                     ******************************                              

consensus_811#0      ------------------------------------------------------------
consensus_811#1      CGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATAT 506
                                                                                 

consensus_811#0      ---------------------------------------
consensus_811#1      ATATATATATATATATATATATATATATATATATATATA 545
                                                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)