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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence
[TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTGGAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT]
[+] EMBL BI503779 [TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTGGAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT]
[+] EMBL BI515844 [ GGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAA ]
consensusID : consensus_816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[ATGGTGAAAAAAGAATAAGTGTGGAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGAGATCACGC]
[+] EMBL BI506236 [ATGGTGAAAAAAGAATAAGTGTGGAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGAGATCACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_816#0 TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTG 60
consensus_816#1 ------------------------------------------------------------
consensus_816#0 GAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTA 120
consensus_816#1 ----------ATGGTGAAAAAA--GAATA---AGTGTGGA---------GATCAAAGTTA 36
************ ***** *** **** ***********
consensus_816#0 GCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTA 180
consensus_816#1 GCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTA 96
************************************************************
consensus_816#0 TATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAA 240
consensus_816#1 TATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAA 156
******************************************************** **
consensus_816#0 GGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCT 300
consensus_816#1 GGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCT 216
************************************************************
consensus_816#0 AAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGA 360
consensus_816#1 AAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGA 276
************************************************************
consensus_816#0 ATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGA 420
consensus_816#1 ATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGA 336
************************************************************
consensus_816#0 ATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATT 480
consensus_816#1 ATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATT 396
**************************************** *****************
consensus_816#0 AAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAA 540
consensus_816#1 AAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAA 456
************************************************************
consensus_816#0 AAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT---------------- 584
consensus_816#1 AAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGA 516
********************************************
consensus_816#0 --------
consensus_816#1 GATCACGC 524
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |