These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1155 fasta sequence [AGAAGAAAAATACATGAAGTCACAACCTGCTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTGGTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAACTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGAGCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGCTTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGATTCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCAGAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCATAAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAATGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGAGTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCTAACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA] [+] EMBL BI508978 [AGAAGAAAAATACATGAAGTCACAACCTGCTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTGGTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAA ] [-] EMBL BQ103762 [ TCCAATGAACCTTGCAATCGTGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGCTGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAAAACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGTTGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAACTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGAGCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGCTTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGATTCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCAGAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCATAAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAATGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGAGTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCTAACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA] consensusID : consensus_875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCATCTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAAAAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAATAGAAAGGATACATTTGGAAACTGCTTATAGAATAGGTTTAAAAGCATGTAAAAATTGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC] [+] EMBL BI503508 [TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCATCTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAAAAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAATAGAAAGGATACATTTGGAAACTGCTTATAGAATAGGTTTAAAAGCATGTAAAAATTGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATAATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGGAAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGACAGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGAACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCAAGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_875#0 ------------------------------------------------------------ consensus_875#1 TTTTACATTCAGATAATGTTGTAAAAGAAAAACAGTACTTTACAATATTCACAGCGGCAT 60 consensus_875#0 ------------------------------------------------------------ consensus_875#1 CTTTCATAACCTCAACAATCAGGAACATACAGTACTTCTATGTAAAAATGCCACCAACAA 120 consensus_875#0 -------------------------------AGAAGAAAAATACATGAAGTCACAACCTG 29 consensus_875#1 AAAAGACTGATTTAGACAAATTAGCATGGGCTTGGGTGGAAGGTGTGGTTTTAGACCAAA 180 * ** ** * * * * consensus_875#0 CTGAAGTAATGCCTTTAGAAAGTTCTTTATCTGAGTTACGCGATCCTACACAATATGTTG 89 consensus_875#1 TAGAAAGGATACATTTGGAAACTGCT---TATAGAATA---GGTTTAAAAGCATGTAAAA 234 *** ** * *** **** * ** * * ** * * * * ** * consensus_875#0 GTCTAAAGAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATA 149 consensus_875#1 AT-TGCAAAATTTAGGTGCAACCTGTTATGTTAATAGCTTAATTCAAATGTGGTTTCATA 293 * * * **************************************************** consensus_875#0 ATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGG 209 consensus_875#1 ATGAAGATATGAGGAGAATAATATACAAGTGGAATATCACAGATGATCCAGAGGAAAAGG 353 ************************************************************ consensus_875#0 AAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGAC 269 consensus_875#1 AAGCACTATATCAAGCTAAGAAGGCAGGAGTACCATTTCATCCAGTGACAGCAGTTGGAC 413 ************************************************************ consensus_875#0 AGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGA 329 consensus_875#1 AGTTGCAATATATATTTGCAATGATGCAATTTGGAAATCGTCGTCTACTCGATCCAATGA 473 ************************************************************ consensus_875#0 ACCTTGCAATCGCGTTGTCATTGGATACTNGAACTCAGCAGGATGCACAGGAATTCTCCA 389 consensus_875#1 ACCTTGCAATCGCGTTGTCATTGGATACTAGAACTCAGCAGGATGCACAGGAATTCTCCA 533 ***************************** ****************************** consensus_875#0 AGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAACTGAAGCAGATGC 449 consensus_875#1 AGCTGCTTCTCTGCCATATCGAAGGGAAACTTCAACAAAACTCAGAAC------------ 581 ************************************************ consensus_875#0 TGCAGAGGCTGACCCAAGGAAAATACAGCTATATCAATTGGTGGGTTTTCTGAAGTGGAA 509 consensus_875#1 ------------------------------------------------------------ consensus_875#0 AACAAATGAGAATTGTCCTAAACGATGATGATGCTGATGATCTTGACGATGAGAACATGT 569 consensus_875#1 ------------------------------------------------------------ consensus_875#0 TGCTCGAAATGCGGAACTGAATATCCAACGTCCACAACGTTCTACGAATTGGATCTACAA 629 consensus_875#1 ------------------------------------------------------------ consensus_875#0 CTTGCAGCCACTTTGAAAGAGGCAATAGAGAAATACTTGTCTGTGGAACAGTTGACTGGA 689 consensus_875#1 ------------------------------------------------------------ consensus_875#0 GCAAATCAGTATCACTGCGTTACCTGCAATGACAAAAAAGATGCGCGCCGTTTTATACGC 749 consensus_875#1 ------------------------------------------------------------ consensus_875#0 TTGGAATCTCTTCCAGAAACATTAAATATACAGTTAATGCGTTTTGTGTTTCATAGAGAT 809 consensus_875#1 ------------------------------------------------------------ consensus_875#0 TCTGGGCAGAAAAGAAAGTTGAATTCTTTTATACAATTTCCCGAAGATCTTGATATGTCA 869 consensus_875#1 ------------------------------------------------------------ consensus_875#0 GAATATGTGAGGTGTCCATTACAAACTCATTTGTACAGTCTTGTAGCAGTTTTGAGTCAT 929 consensus_875#1 ------------------------------------------------------------ consensus_875#0 AAAGGACCATCTGCACATTCGGGTCATTATATTGCAAATATATGCAATTCAAATGGGGAA 989 consensus_875#1 ------------------------------------------------------------ consensus_875#0 TGGTATCAATTTAGTGATGATAAAGTAGAAAAAATGCAGAATAAAAGAATCGAGGATGGA 1049 consensus_875#1 ------------------------------------------------------------ consensus_875#0 GTTAATGAGAATTCAAAGATTATAAAACGAGGTCGTATACCGAAAGGATTTTTATCTTCT 1109 consensus_875#1 ------------------------------------------------------------ consensus_875#0 AACACTGCATATCATGTTAGTTTATAAAAAAGTTACTTCTGAAAAA 1155 consensus_875#1 ---------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |