These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_88#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence [GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGTGACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCGAAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACACATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGAGGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCCTGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAGAGTATGGACTCCGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCTCTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG] [+] EMBL BI512872 [GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGTGACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCGAAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACACATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGAGGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCCTGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGAC ] [+] EMBL BI509454 [ GCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAGAGTATGGACTCCGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAAAAA ] [+] EMBL BI511947 [ ACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCA ] [+] EMBL BI509884 [ ATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGGTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCTCTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG] consensusID : consensus_88#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTGGCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGGATCAAAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGGAAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCCTCCAAGAACGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGAGATGAGGAAAGGCATAGAGAGAGAGAAAAAAAAAAAGATGCGAAGAAGNNGGGGAAAGATACCTCCAAAAGACAATTTTACACAGGATGT] [+] EMBL BI513081 [TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTGGCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGGATCAAAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGA ] [+] EMBL BI513154 [ GGCATGTAAGAACGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGGAAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCCTCCAAGAACGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGAGATGAGGAAAGGCATAGAGAGAGAGAAAAAAAAAAAGATGCGAAGAAGNNGGGGAAAGATACCTCCAAAAGACAATTTTACACAGGATGT] consensusID : consensus_88#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence [AAAGAAGGAAAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCCTCCAAGAGCGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGGGACAAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG] [+] EMBL BI515735 [AAAGAAGGAAAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCCTCCAAGAGCGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGGGACAAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG] [+] EMBL BI511368 [ AAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_88#1 --TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATC--C 56 consensus_88#2 ------------------------------------------------------------ consensus_88#0 GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGT 60 consensus_88#1 GGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTC 116 consensus_88#2 ------------------------------------------------------------ consensus_88#0 GACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCG 120 consensus_88#1 GATACACGCGTCGCTACCCCATTTCCTACCCTCG--CCGGCACTGGCATCGCCGGTTGGT 174 consensus_88#2 ------------------------------------------------------------ consensus_88#0 AAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACAC 180 consensus_88#1 TCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTG 234 consensus_88#2 ------------------------------------------------------------ consensus_88#0 ATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGA 240 consensus_88#1 GCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGG-ATCA 293 consensus_88#2 ------------------------------------------------------------ consensus_88#0 GGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCC 300 consensus_88#1 AAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGG 353 consensus_88#2 ------------------------------------------------------------ consensus_88#0 TGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGA 360 consensus_88#1 GAACGAGG--GAACGACCGTGCGTGCTCACACCCCGGAAATATA---CGATAAAAACGAG 408 consensus_88#2 ------------------------------------------------------------ consensus_88#0 GACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCG 420 consensus_88#1 GACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGG 468 consensus_88#2 ---------------------------------------------------AAAGAAGGA 9 consensus_88#0 GACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAG--AGTATGGACTC 478 * * * consensus_88#1 AAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCC-TCCAAGAACGAGGTATC 527 consensus_88#2 AAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCC-TCCAAGAGCGAGGTATC 68 consensus_88#0 CGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCC 538 * * **** *** * * ** * * ** ** * * consensus_88#1 GA-GTATATCGAATCGCTCGAGAA--ATCCACGCTTCAG------CGAAGGAATCGAGG- 577 consensus_88#2 GA-GTATATCGAATCGCTCGAGAA--ATCCACGCTTCAG------CGAAGGAATCGAGG- 118 consensus_88#0 GATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGG 598 ** * * * * ** *** *** * ****** *** ** ***** consensus_88#1 ATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGG 637 consensus_88#2 ATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGG 178 consensus_88#0 ATCCCTGTTGAAAGT--CACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTG 656 **** * ** * **** ** ****** * ** * *** * consensus_88#1 GGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGA 697 consensus_88#2 GGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGA 238 consensus_88#0 ACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGA 716 * ***** * * ** *** * ** * ** consensus_88#1 ----GATGAGGAAAGGCAT--------AGAGAGAGAGAAAAA------AAAAAAGATGCG 739 consensus_88#2 AGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGA 298 consensus_88#0 TTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTT 776 * * * ** * * * * * * * * consensus_88#1 AAGAAGNNGGGGAAAGATACCTCCAA---AAG------ACAATTTT-----ACACAGGAT 785 consensus_88#2 AATAAAGGAAGGGGAAATGCGAATAGATCAGG------AAAATTTTCGAGTACACGGGAC 352 consensus_88#0 AGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCT 836 * ** * * * * * * * * consensus_88#1 GT---------------------------------------------------------- 787 consensus_88#2 AAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG 412 consensus_88#0 CTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCA 896 consensus_88#1 ------------------------------------------------------------ consensus_88#2 ------------------------------------------------------------ consensus_88#0 TTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCAT 956 consensus_88#1 ------------------------------------------------------------ consensus_88#2 ------------------------------------------------------------ consensus_88#0 CCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCT 1016 consensus_88#1 ------------------------------------------------------------ consensus_88#2 ------------------------------------------------------------ consensus_88#0 CTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACG 1076 consensus_88#1 ------------------------------------------------------------ consensus_88#2 ------------------------------------------------------------ consensus_88#0 CTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCG 1136 consensus_88#1 -------------------------------------------------- consensus_88#2 -------------------------------------------------- consensus_88#0 GTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG 1186 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |