These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [ATGATTAGCCACAGTCGAAATAGCAGCGATAGCTCCGGTTATCATGAGGCTTCTGTGTTAAGTGATAATCCAGATTCTGCGGGAAGACTTCCAGAAACATTGCCCAGAAGGAACAAAGTTCCTTTGGAAATGTCTCGGAAATTAGCTCAAATGTCACAGTCCAGTAAAAGTCTAAATAATTTGGCTTCTGTACCTGGTACACTTAGTCATGGCATTAGCAATACTTCATTGAGTTCTACAGGATTACGAAAGAAAAGAGTTGCACCTCCTCCGCCAGTAACTAGGCCTTTATCATCGGCGATTTCTATTCAAGCATTAGAACGTATAGTTGACTCTGAAGAATCCTTAACATCAGATATGGATCCTTCTAAACCTCCTTCTGACATTGGTGTTCCATCTAAAGCGAATTCAGATATAGAAGAACGTCCAAAAGCTAATTCAGATATTGGAATAACAACTGTTAGCTCAATATTGTCTTCGAATATTGATTTTATAAAATCTGATACTACAAAAGTGGAATTAGAATCAAAAAGCGGCAAATCTGATCTTGAATCGTGTCATAGATCTGATTCTATAAATGTTAAGTTACCCAGCACGGAGTCAAAACACCCTGCA] [+] EMBL BI505523 [ATGATTAGCCACAGTCGAAATAGCAGCGATAGCTCCGGTTATCATGAGGCTTCTGTGTTAAGTGATAATCCAGATTCTGCGGGAAGACTTCCAGAAACATTGCCCAGAAGGAACAAAGTTCCTTTGGAAATGTCTCGGAAATTAGCTCAAATGTCACAGTCCAGTAAAAGTCTAAATAATTTGGCTTCTGTACCTGGTACACTTAGTCATGGCATTAGCAATACTTCATTGAGTTCTACAGGATTACGAAAGAAAAGAGTTGCACCTCCTCCGCCAGTAACTAGGCCTTTATCATCGGCGATTTCTATTCAAGCATTAGAACGTATAGTTGACTCTGAAGAATCCTTAACATCAGATATGGATCCTTCTAAACCTCCTTCTGACATTGGTGTTCCATCTAAAGCGAATTCAGATATAGAAGAACGTCCAAAAGCTAATTCAGATATTGGAATAACAACTGTTAGCTCAATATTGTCTTCGAATATTGATTTTATAAAATCTGATACTACAAAAGTGGAATTAGAATCAAAAAGCGGCAAATCTGATCTTGAATCGTGTCATAGATCTGATTCTATAAATGTTAAGTTACCCAGCACGGAGTCAAAACACCCTGCA] [+] EMBL BI508025 [ TTAGAACGTATAGTTGACTCTGAAGAATCCTTAACATCAGATATGGATCCTTCTAAACCTCCTTCTGACATTGGTGTTCCATCTAAAGCGAATTCAGATATAGAAGAACGTCCAAAAGCTAATTCAGATATTGGAATAACAACTGTTAGCTCAATATTGTCTTCGAATATTGATTTTATAAAA ] consensusID : consensus_896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TTTTTTTCTATAATGTTTTTTAGATTTTTGTTTTTTGAAGTTTGAATTGCTTCTTCTGTTTTTGTATCTATTAAAGACTCGGATATAGAAGTGATTGCTTCAAAATTATCAAATACTGGAGATGCATTGTCTCTAAAAGCACTTGGAGGAGGTAAAAGTTGATATTCCCACTCAACGATGGATAAATCTTCTTCAAGTGTTGATACATAATCTGATGTATCCTGTTGTGAATTTATAGTTAAATTTGATGCACTGGTATTCATACATATAGTATTTAAATCATTAGGATATTCAGCATTCTTTTTATTTTTCTGTTCTGTTTCTTTAAAAATATCCTTTGACTTTAATTTAATTTTTGCTGGAGCAATTGATATTTCATCGGGTGACGAAACGGAATTGGATAAAGTATCAAATACTTTTTGGAGCAGGACATCAGTCTCTGAGAGATCTGTATCTCTCGTCTGCAGTACTCTAGCGTCTAGAGGAGCATCTTCTATTGGTGCAGGGTGTTTTGACTCCGTGCTGGGTAACTTAACATTTATAGAATCAGATCTATGACACGATTCAAGATCAGATTTGCCGCTTTTTGATTCTAATTC] [+] EMBL BQ103779 [TTTTTTTCTATAATGTTTTTTAGATTTTTGTTTTTTGAAGTTTGAATTGCTTCTTCTGTTTTTGTATCTATTAAAGACTCGGATATAGAAGTGATTGCTTCAAAATTATCAAATACTGGAGATGCATTGTCTCTAAAAGCACTTGGAGGAGGTAAAAGTTGATATTCCCACTCAACGATGGATAAATCTTCTTCAAGTGTTGATACATAATCTGATGTATCCTGTTGTGAATTTATAGTTAAATTTGATGCACTGGTATTCATACATATAGTATTTAAATCATTAGGATATTCAGCATTCTTTTTATTTTTCTGTTCTGTTTCTTTAAAAATATCCTTTGACTTTAATTTAATTTTTGCTGGAGCAATTGATATTTCATCGGGTGACGAAACGGAATTGGATAAAGTATCAAATACTTTTTGGAGCAGGACATCAGTCTCTGAGAGATCTGTATCTCTCGTCTGCAGTACTCTAGCGTCTAGAGGAGCATCTTCTATTGGTGCAGGGTGTTTTGACTCCGTGCTGGGTAACTTAACATTTATAGAATCAGATCTATGACACGATTCAAGATCAGATTTGCCGCTTTTTGATTCTAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_896#0 ---------ATGATTAGCCACAGTCGAAATAGCAGCGATAGCTCCGGTTA-TCATGAGGC 50 consensus_896#1 TTTTTTTCTATAATGTTTTTTAGATTTT-TGTTTTTTGAAGTTTGAATTGCTTCTTCTGT 59 ** ** ** * ** * ** * * * consensus_896#0 TTCTGTGTTAAGTGATAATCCAGATTCTGCGGGAAGACTTCCAGAAACATTGCCCAGAAG 110 consensus_896#1 TTTTGTATCTATTAAAGACTCGGATATAGAAGTGATTGCTTCAAAATTATCAAATACTGG 119 ** *** * * * * * * *** * * * * ** ** ** * * consensus_896#0 GAACAAAGTTCCTTTGGAAATGTCTCGGAAATTAGCTCAAATGTCACAGTCCAGTAAAAG 170 consensus_896#1 AGATGCATTGTCTCTAAAAGCA-CTTGGAGG--AGGTAAAAGTTGATATTCCCACTCAAC 176 * * * ** * ** ** *** ** * *** * * * *** ** consensus_896#0 TCTAAATAATTTGGCTTCTGTACCTGGTACACTTAGTCATGGCATTAGCAATACTTCATT 230 consensus_896#1 GATGGATAAATCTTCTTCAAGTGTTGATACA--TAATC-TGATGT-----ATCCTGTTGT 228 * **** * **** ** **** ** ** ** * ** ** * consensus_896#0 GAGTTCTACAGGATTACGAAAGAAAAGAGTTGCACCTCCTCCGCCAGTAACTAGGCCTTT 290 consensus_896#1 GAATT-TATAG--TTA-AATTTGATGCACTGGTATTCATACATATAGTATTTAAATCATT 284 ** ** ** ** *** * * * * * * * **** ** * ** consensus_896#0 ATCATCGGCGATTTCTATTCAAGCATTAGAACGTATAGTTGACTCTGAAGAATCCTTAAC 350 consensus_896#1 AGGATATTCAGCATTCTTTT---TATTTTTCTGTTCTGTTTCTTTAAAAATATCCTTTGA 341 * ** * * ** *** ** *** * ** ****** consensus_896#0 ATCAGATATGGATCCTTCTAAACCTCCTTCTGACATTGGTGTTCCATCTAAAGCGAATTC 410 consensus_896#1 CTTTAATTTAATTTTTGCTGGAGCA---------ATTGATATTTCATCGGGTGACGAAAC 392 * ** * * * ** * * **** * ** **** * * * consensus_896#0 AGATATAGAAGAACGTCCAAAAGCTAATTCAGATATTGGAATAACAACTGTTAGCTCAAT 470 consensus_896#1 GGAATTGGATAAAGTATCAAATACTTTTTGGAGCAGGACATCAGTCTCTGAGAGATCTGT 452 ** * ** ** **** ** ** * * * *** ** ** * consensus_896#0 ATT----GTCTTCGAATATTGATTTTATAAA-----ATCTGATACTACAAAAGTGGAATT 521 consensus_896#1 ATCTCTCGTCTGCAGTACTCTAGCGTCTAGAGGAGCATCTTCTATTGGTGCAGGGTGTTT 512 ** **** * * * * ** * **** ** * ** * ** consensus_896#0 AGAATCAAAAAGCGGCAAATCTGATCTTGAATCGTGTCATAGATCTGATTCTATA-AATG 580 consensus_896#1 TGACTCCGTGCTGGGTAA--CTTAACATTTATAGAATCAGATCTATGACACGATTCAAGA 570 ** ** ** ** ** * * * ** * *** * * *** * ** ** consensus_896#0 TTAAGTTACCCAGCACGGAGTCAAAACACCCTGCA 615 consensus_896#1 TCAGATTTGCCGCTTTTTGATTCTAATTC------ 599 * * ** ** * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |