These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGATGAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTTTGTTTACTTTTTTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGCGGTGGATAGAAATATTCATTCGATCTTGCTCATTTATTCGTACGTATTATACATCTCCATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGGAGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTATATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGGATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAAAGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAACAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAACACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT] [+] EMBL BI506703 [TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGATGAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTTTGTTTACTTTTTTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGCGGTGGATAGAAATATTCATTCGATCTTGCTCATTTATTCGTACGTATTATACATCTCCATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACACAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGC ] [+] EMBL BI509247 [ CATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGGAGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTATATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGGATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAAAGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAACAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAACACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT] consensusID : consensus_973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CAGTTTTCATCGACTGGCCGATCTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGCGAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGAAGAAGAGAAATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCAAATTACATATGATTTTTTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAAATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTCAAATGTTAGCTGTCAACTCGAACCGTCGTGCATCGTGACAATTAATGTTCCACGAATATGACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGAAAAAAATTGATGGATCGATTTCTCTATATCGAGTTGACGCGCGATGTATCTAGTTTATTTTTATTTTTTTT] [+] EMBL BI505702 [CAGTTTTCATCGACTGGCCGATCTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGCGAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGAAGAAGAGAAATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCAAATTACATATGATTTTTTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAAATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTCAAATGTTAGCTGTCAACTCGAACCGTCGTGCATCGTGACAATTAATGTTCCACGAATATGACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGAAAAAAATTGATGGATCGATTTCTCTATATCGAGTTGACGCGCGATGTATCTAGTTTATTTTTATTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_973#0 TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGAT 60 consensus_973#1 --------------------------------------CAGTTTTCATCGACTGGCCGAT 22 ** *** **** * * **** consensus_973#0 GAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTT-TGTTTACTTTT 119 consensus_973#1 CTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGC 82 *** ** * * * ** * ** ** *** * * consensus_973#0 TTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGC 179 consensus_973#1 GAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGA-AGAAGAGA 141 * ** * * * ** * * ** * * * * *** * ** * * ** consensus_973#0 GGTGGATAGAAATATTC-ATTCGATCTTGCTCA-TTTATTCGTACG-TATTATACATCTC 236 consensus_973#1 AATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCA 201 * * * * *** ** * ***** * * ***** *** * * ** **** * consensus_973#0 CATCG-ATCTGATTAAATATATTCATTG-ATATCCGCGTATATTTGGAGGAAGGGGGAAA 294 consensus_973#1 AATTACATATGATTTT-TTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAA 260 ** ** ***** * *** * * ** ** * ** ** consensus_973#0 CGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATG 354 consensus_973#1 ATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTC 320 *** *** * ** * * * ** ***** ** * consensus_973#0 AAGCAC--GCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTT 412 consensus_973#1 AAATGTTAGCTGTCAACTCGAACCGTCGTGCATCG-TGACAATTAATGTTCCACGAATAT 379 ** ** * * *** * * * * ** ** ** * ** * * consensus_973#0 GGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGG 472 consensus_973#1 GACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGA-AAAAAAT 438 * * * * *** ** * * * * * * ***** consensus_973#0 AGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTAT 532 consensus_973#1 TGATGGATCGATTTCTCTATAT---CGAGTTGACGCGCGATGTATCTAGTTTATTTTTAT 495 ** * ** * ** **** ** * * ** * ** * **** consensus_973#0 ATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGG 592 consensus_973#1 TTTTTTT----------------------------------------------------- 502 * * consensus_973#0 ATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAA 652 consensus_973#1 ------------------------------------------------------------ consensus_973#0 AGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAA 712 consensus_973#1 ------------------------------------------------------------ consensus_973#0 CAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAA 772 consensus_973#1 ------------------------------------------------------------ consensus_973#0 CACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT 830 consensus_973#1 ---------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |