These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATCAGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTAGAAGTAATCGGGCAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAAGTCGAACCAAAATATTATGCAGATGGAGAAGATGCTTATGCAATGAAACGCGATCTTAGCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACAAACAAAGATGGTAATACACACATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTATTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATGTATTTTTCATAAATGAATTTTCACGGAAAAT] [+] EMBL BI503144 [AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATCAGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTAGAAGTAATCGGGCAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAAGTCGAACCAAAATATTATGCAGATGGAGAAGATGCTTATGCAATGAAACGCGATCTTAGCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACAAACAAAGATGGTAATACACACATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTATTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATGTATTTTTCATAAATGAATTTTCACGGAAAAT] consensusID : consensus_974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GTATGAGTGAATCTTCACCTGTAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTAAAGATTAAAATCAGATTTATAAATTTGAAAAAAAAAAGTGATTAGTAATAAGAAAAAAAATATATCAAAAAAAAGAGAATTGACCAAAATTGTCTTTCATTTATATATCCATAACATTATAAGTAATCAAAATGTCTATAAATATACGCTGTGCTACAACAGATGATTTGTTGAATATACAGCATTGTAATTTGCAATGTCTACCAGAAAATTATCAAATGAAATATTATTTGTATCATGCTCTTTCTTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAG] [+] EMBL BI516286 [GTATGAGTGAATCTTCACCTGTAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTAAAGATTAAAATCAGATTTATAAATTTGAAAAAAAAAAGTGATTAGTAATAAGAAAAAAAATATATCAAAAAAAAGAGAATTGACCAAAATTGTCTTTCATTTATATATCCATAACATTATAAGTAATCAAAATGTCTATAAATATACGCTGTGCTACAACAGATGATTTGTTGAATATACAGCATTGTAATTTGCAATGTCTACCAGAAAATTATCAAATGAAATATTATTTGTATCATGCTCTTTCTTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAG] consensusID : consensus_974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [GAGGTTATGACACTATTCCCGTGTGTGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGGAAATCGTCCTAGCAGCCTTCTCCGTGATATCGAGTCTACTCATAGTATTTGGCCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGTTATTGCTGCGCGGTATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAGTTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTTTCAAGATTCAGGTTTGTTCGAGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTA] [+] EMBL BI511912 [GAGGTTATGACACTATTCCCGTGTGTGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGGAAATCGTCCTAGCAGCCTTCTCCGTGATATCGAGTCTACTCATAGTATTTGGCCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGTTATTGCTGCGCGGTATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAGTTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTTTCAAGATTCAGGTTTGTTCGAGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_974#0 AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCA 60 consensus_974#1 ------------------GTATGAGTGAATCTT-CACCTGTAAATGACTTAAAGA-ATGG 40 consensus_974#2 ------------------------------------------------------------ consensus_974#0 CGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATC 120 consensus_974#1 TAGATCTCGTA-TGAAAAAAATTCGCA-AAGATTAAAGATTAAAATCAGATTTATAAATT 98 consensus_974#2 -----------------------------------GAGGTTATGACACTATTCCCGTGTG 25 ** * * * consensus_974#0 AGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTA 180 consensus_974#1 TGAAAA--AAAAAAGTGATT-AGTAATAAGAAAAAAAATATATCAAAAAAAAG------A 149 consensus_974#2 TGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGG 85 * * * * * * * * * * consensus_974#0 GAAGTAATCGGG-CAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAA 239 consensus_974#1 GAATTGACCAAAATTGTCTTTCATTTATATATCCATAA----CATTATAAGTAATCAAAA 205 consensus_974#2 AAATCGTCCTAG-CAGCCTTCTCCGTG-ATATCGAGTC----TACTCATAGTATTTGG-- 137 ** * * ** * *** * * * * consensus_974#0 GTCGAACCAAAATATTATGCAGATGGAGAAGATG-CT-TATGCAATGAAACGCGATCTTA 297 consensus_974#1 TGTCTATAAATATACGCTGT-GCTACAACAGATGATT-TGTTGAATATACAGCATTGTAA 263 consensus_974#2 ----CCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGT-TATTGCTGCGCGG 192 * * **** * * * ** consensus_974#0 GCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACA-AACAAAGATGGTAATACACAC 356 consensus_974#1 TTTGCAATGTCTACCAGAAAATTATCAAATGAAATATT-ATTTGT-ATCATGCT-CTTTC 320 consensus_974#2 TATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAG 252 ** ** * * * * * ** * * consensus_974#0 ATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTA 416 consensus_974#1 TTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTAT----- 375 consensus_974#2 TTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTT---TCAAGATTCAGGTTTGT--TCG 307 * * * * * * ** * * consensus_974#0 TTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATG 476 consensus_974#1 ----GTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACAT--CACG 429 consensus_974#2 AGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATG-ACTTAAAGA-ATGGTA-G 364 * * * * * * ** * * * * * ** * * consensus_974#0 TATTTTTCATAAATGAATTTTCACGGAAAAT 507 consensus_974#1 AGTTTGGCAGTAAAAAGATCTCATAG----- 455 consensus_974#2 ATCTCGTATGAAAAAAATTCGCAAAGATTA- 394 * ** * * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |