These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 573 fasta sequence [TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAGTGCCGTTCACTATTCCATGCACTATTCCCTGAA] [+] EMBL BI513648 [TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATA ] [+] EMBL BI515966 [ GACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAGTGCCGTTCACTATTCCATGCACTATTCCCTGAA] consensusID : consensus_980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAAAGCCCAAGAAATGAGAACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTCACTTCCAGCTAGTTATAGTGG] [+] EMBL BI505740 [ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAAAGCCCAAGAAATGAGAACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTCACTTCCAGCTAGTTATAGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_980#0 TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCC 60 consensus_980#1 ------------------------------------------------------------ consensus_980#0 ACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAG 120 consensus_980#1 ------------------------------------------------------------ consensus_980#0 CAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATA 180 consensus_980#1 ------------------------------------------------------------ consensus_980#0 TTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCT 240 consensus_980#1 -------------------ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCT 41 ***************************************** consensus_980#0 TGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGC 300 consensus_980#1 TGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGC 101 ************************************************************ consensus_980#0 AGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGT 360 consensus_980#1 AGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGT 161 *********************************** *********************** consensus_980#0 AGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGG 420 consensus_980#1 AGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNG 221 ******************************************************* * consensus_980#0 TCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGC 480 consensus_980#1 TCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGC 281 ************************************************************ consensus_980#0 TTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAG 540 consensus_980#1 TTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAA--AGCCCAAGAAATGAG 339 *********************************** ** * * ** ** consensus_980#0 TGCCGTTCACTA-----TTCCATGCA-CTATTCCCTGAA--------------------- 573 consensus_980#1 AACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTC 399 ** * * ** ** * ** *** * consensus_980#0 --------------------- consensus_980#1 ACTTCCAGCTAGTTATAGTGG 420 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |