cluster # 1

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Oryza sativa
cluster # 1 cluster # 1 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1#0 length = 1485 sequences # 1

consensus_1#1 length = 384 sequences # 1

consensusID : consensus_1#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1485
fasta sequence

                              [AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC]

[+] EMBL AK069580             [AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC]




>consensus_1#0
AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTC
GCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATC
GCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCC
CACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGT
GAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGC
AAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAA
CCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCG
GAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGAT
GATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGAC
AAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAA
TCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAA
TCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGC
AAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAA
GCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCG
ACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATG
ATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACG
GACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAG
CTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAG
GCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGAC
GCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGAC
GCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACC
GACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGGC
GACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATA
ATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACA
ACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC

consensusID : consensus_1#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CCAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGCCGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGTGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCTGTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761561             [CCAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGCCGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGTGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCTGTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1#1
CCAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCG
CCGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGG
GTGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCA
TAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAA
CAACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATC
TGTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1#0      AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTC 60
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATC 120
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCC 180
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      CACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGT 240
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGC 300
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      AAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAA 360
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      CCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCG 420
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGAT 480
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGAC 540
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      AAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAA 600
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      TCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAA 660
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      TCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGC 720
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      AAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAA 780
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCG 840
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      ACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATG 900
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      ATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACG 960
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAG 1020
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      CTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAG 1080
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGAC 1140
consensus_1#1      ------------------------------------------------------------
                                                                               

consensus_1#0      GCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGAC 1200
consensus_1#1      -----------------------------------------------------------C 1
                                                                              *

consensus_1#0      GCGGCGCTCAAG-AAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCAC 1259
consensus_1#1      CAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGC 61
                     *  ** **   ******* ***** * ****** * ***************** ** *

consensus_1#0      CGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGG 1319
consensus_1#1      CGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGG 121
                   *** *** ****** * ******************* ***********************

consensus_1#0      CGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCAT 1379
consensus_1#1      TGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCAT 181
                    ******* ****************** ************** *****************

consensus_1#0      AATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAAC 1439
consensus_1#1      AATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAAC 241
                   ************************************************************

consensus_1#0      AACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC-------------- 1485
consensus_1#1      AACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCT 301
                   ********************** ***********************              

consensus_1#0      ------------------------------------------------------------
consensus_1#1      GTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAA 361
                                                                               

consensus_1#0      -----------------------
consensus_1#1      AAAAAAAAAAAAAAAAAAAAAAA 384