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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1242 fasta sequence
[GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG-AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC]
[+] EMBL AB028182 [GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCAaaaaa ]
[+] EMBL AK073667 [ aCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC]
[+] EMBL C26682 [ CCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAG GGCG AGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCG GGCCNGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCAACCCGCGCGACCGAAAGTAACCCAACGGCTTCCG ]
[+] EMBL OSC101541 [ CTCATTCCCTCAAGTCCCAAGATCGAACANCTCGTGTCCATGGCGGCGGCGAAG GGCGAAGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTNGTGGCGCACTACCTCTGCCCGCGCGCCNNGGNCAGCGCCGCCCCGGTCCCCATNATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCNCCACCGCGACCTCTTAGGNCGACGCGAGTGGTACTTCTTCACCCNGCGCGACCGAAAGTACCCCAA ]
[+] EMBL CB000137 [ gGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCCCTTCG AAATCTTCTGAGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCTGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCGGGCAAGGTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCGGTATGATATGC ]
[+] EMBL CA999705 [ GCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGGTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTT ]
consensusID : consensus_10002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA]
[+] EMBL AU181405 [CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10002#0 GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGC 60
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 GGCGGCGAAGCGGCGAGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCG 120
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCG 180
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCT 240
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAA 300
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 GTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGG 360
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTT 420
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCT 480
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTG 540
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 GGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGA 600
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 GGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGA 660
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 GGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGA 720
consensus_10002#1 -----------------------CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGA 37
********************************** **
consensus_10002#0 CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 780
consensus_10002#1 CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 97
************************************************************
consensus_10002#0 CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 840
consensus_10002#1 CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 157
************************************************************
consensus_10002#0 GCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 900
consensus_10002#1 GCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 217
*************** ***** **************************************
consensus_10002#0 TCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACAT 960
consensus_10002#1 TCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACAT 277
****************************** *****************************
consensus_10002#0 GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 1020
consensus_10002#1 GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 337
************************************************************
consensus_10002#0 TTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 1080
consensus_10002#1 TTATGAGCAGTATGA--TGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 395
*************** *******************************************
consensus_10002#0 ATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAG 1140
consensus_10002#1 ATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA----------- 444
*********************************** * * *
consensus_10002#0 ATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCA 1200
consensus_10002#1 ------------------------------------------------------------
consensus_10002#0 CCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC 1242
consensus_10002#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||