cluster # 10007

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10007 cluster # 10007 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10007#0 length = 2076 sequences # 5

consensus_10007#1 length = 451 sequences # 1
consensus_10007#2 length = 159 sequences # 1

consensusID : consensus_10007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2076
fasta sequence

                              [TTCCCGTCGAGCCCTGCAGAAATCTTTCAACAGAAACAGCGAACTAGTAGTAGATGTCATCAGGGAAAAGAAAATGAAAAAAAGAACAAAAAAAAAAAACAGAACGAAGACAGCGGCATGCATCGCAGCATAGGCCGGTCAAGAAGACGATGGCCCTGACGAGGCGCCTCCTCATCGATCTCTCGTCAAGACGCCGCCTTTTCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAACCAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGTCGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGCACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCTCCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCGGCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAGCGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGGCGATGATCACCCGGCAGCCGTCGTCGGGAGAGACGACGACGACGGCGGCGTTGGCGGCGACGTGCGACGCGGAGAGCGCGCTGCTGAGGGTGTACCTCTACGACCTCCCGCCGGAGTTCCACTTCGGCATGCTGGGGTGGGACGGCAAGGCGGCCGGCGCGGCGTGGCCGGACGTGGCCGGCGACCCGCGCGCCGTGCCGCGCTACCCGGGCGGCCTGAACCTGCAGCACAGCGTCGAGTACTGGCTCACCCTGGACATCCTCTCCTCCACCACCTCCGGCGACCACCGCCGCCGCCGTCCGTGCACCGCCGTGAGGGTGACGAACGCGAGCCTTGCCGACGTGTTCCTGGTGCCGTTCTTCGCGTCGCTGAGCTACAACCGGCAGTCGAAGTCGCCGCACGGCGGCCATGGGAGTGGCGGCCGGAGCGACAGGCAGCTGCAGGGCGAGCTGGTGAGGTACCTGGCGAGGCGGGAGGAGTGGCGGCGGTGGGGCGGCGCGGACCACCTCGTCGTGCCGCACCACCCGAACAGCATGATGGACGCCCGGCGGCGGCTCAGCGCCGCCATGTTCGTCCTCTCCGACTTCGGCAGGTACCCGCCGGACGTCGCCAACCTGAGGAAGGACGTGATCGCGCCGTACAAGCACGTCGTCCCCTCCCTCGGCGACGGCGACTCGCCGGGGTTCGAGCAGCGCCCCGTCCTCGCTTACTTCCAGGGCGCCATTCATAGGAAAAATGGTGGAAGGGTTCGTCAGAGGCTGTACCAGCTGATCAAGGACGAGAAGGACGTCCACTTCACCTACGGCAGCGTCCGTCAGAACGGCATCAGGCGCGCCACCAAGGGGATGGCCTCCTCCAAGTTCTGCCTCAACATCGCCGGCGACACCCCCTC-CTCCAACCGCCTCTTCGACGCCATCGTCAGC-CACTGCGTCCCCGTGATCATCAGCGACGACATCGAGCTCCCCTTCGAGGACGTCCTCGACTACTCCGCCTTCTGCGTGTTCGTCCGCGCCTCCGACGCCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCA-GGAAGAATGGACGGCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAGTACCAGTACCCTTCGCAGCCTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCATTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACATTTTCTGAATCATAAAAGGTTAGGGTAGCAAAGCATGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCA-TGTGGCTGGTAAAGTTCTATGGTCATTTTGCAATCTAAGTTGCAAGGACTATGTGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTATATTATTCTTATTAGTTCTTTTATCCCCNAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK101476             [TTCCCGTCGAGCCCTGCAGAAATCTTTCAACAGAAACAGCGAACTAGTAGTAGATGTCATCAGGGAAAAGAAAATGAAAAAAAGAACAAAAAAAAAAAACAGAACGAAGACAGCGGCATGCATCGCAGCATAGGCCGGTCAAGAAGACGATGGCCCTGACGAGGCGCCTCCTCATCGATCTCTCGTCAAGACGCCGCCTTTTCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAACCAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGTCGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGCACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCTCCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCGGCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAGCGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGGCGATGATCACCCGGCAGCCGTCGTCGGGAGAGACGACGACGACGGCGGCGTTGGCGGCGACGTGCGACGCGGAGAGCGCGCTGCTGAGGGTGTACCTCTACGACCTCCCGCCGGAGTTCCACTTCGGCATGCTGGGGTGGGACGGCAAGGCGGCCGGCGCGGCGTGGCCGGACGTGGCCGGCGACCCGCGCGCCGTGCCGCGCTACCCGGGCGGCCTGAACCTGCAGCACAGCGTCGAGTACTGGCTCACCCTGGACATCCTCTCCTCCACCACCTCCGGCGACCACCGCCGCCGCCGTCCGTGCACCGCCGTGAGGGTGACGAACGCGAGCCTTGCCGACGTGTTCCTGGTGCCGTTCTTCGCGTCGCTGAGCTACAACCGGCAGTCGAAGTCGCCGCACGGCGGCCATGGGAGTGGCGGCCGGAGCGACAGGCAGCTGCAGGGCGAGCTGGTGAGGTACCTGGCGAGGCGGGAGGAGTGGCGGCGGTGGGGCGGCGCGGACCACCTCGTCGTGCCGCACCACCCGAACAGCATGATGGACGCCCGGCGGCGGCTCAGCGCCGCCATGTTCGTCCTCTCCGACTTCGGCAGGTACCCGCCGGACGTCGCCAACCTGAGGAAGGACGTGATCGCGCCGTACAAGCACGTCGTCCCCTCCCTCGGCGACGGCGACTCGCCGGGGTTCGAGCAGCGCCCCGTCCTCGCTTACTTCCAGGGCGCCATTCATAGGAAAAATGGTGGAAGGGTTCGTCAGAGGCTGTACCAGCTGATCAAGGACGAGAAGGACGTCCACTTCACCTACGGCAGCGTCCGTCAGAACGGCATCAGGCGCGCCACCAAGGGGATGGCCTCCTCCAAGTTCTGCCTCAACATCGCCGGCGACACCCCCTC CTCCAACCGCCTCTTCGACGCCATCGTCAGC CACTGCGTCCCCGTGATCATCAGCGACGACATCGAGCTCCCCTTCGAGGACGTCCTCGACTACTCCGCCTTCTGCGTGTTCGTCCGCGCCTCCGACGCCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCA GGAAGAATGGACGGCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAGTACCAGTACCCTTCGCAGCCTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCATTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACATTTTCTGAATCATAAAAGGTTAGGGTAGCAAAGCATGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCA TGTGGCTGGTAAAGTTCTATGGTCATTTTGCAATCTAAGTTGCAAGGACTATGTGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTATATTATTCTTATTAGTTC                                  ]
[+] EMBL AK105915             [                                                                                               AAAACAGAACGAAGACAGCGGCATGCATCGCAGCATAGGCCGGTCAAGAAGACGATGGCCCTGACGAGGCGCCTCCTCATCGATCTCTCGTCAAGACGCCGCCTTTTCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAACCAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGTCGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGCACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCTCCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCGGCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAGCGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGGCGATGATCACCCGGCAGCCGTCGTCGGGAGAGACGACGACGACGGCGGCGTTGGCGGCGACGTGCGACGCGGAGAGCGCGCTGCTGAGGGTGTACCTCTACGACCTCCCGCCGGAGTTCCACTTCGGCATGCTGGGGTGGGACGGCAAGGCGGCCGGCGCGGCGTGGCCGGACGTGGCCGGCGACCCGCGCGCCGTGCCGCGCTACCCGGGCGGCCTGAACCTGCAGCACAGCGTCGAGTACTGGCTCACCCTGGACATCCTCTCCTCCACCACCTCCGGCGACCACCGCCGCCGCCGTCCGTGCACCGCCGTGAGGGTGACGAACGCGAGCCTTGCCGACGTGTTCCTGGTGCCGTTCTTCGCGTCGCTGAGCTACAACCGGCAGTCGAAGTCGCCGCACGGCGGCCATGGGAGTGGCGGCCGGAGCGACAGGCAGCTGCAGGGCGAGCTGGTGAGGTACCTGGCGAGGCGGGAGGAGTGGCGGCGGTGGGGCGGCGCGGACCACCTCGTCGTGCCGCACCACCCGAACAGCATGATGGACGCCCGGCGGCGGCTCAGCGCCGCCATGTTCGTCCTCTCCGACTTCGGCAGGTACCCGCCGGACGTCGCCAACCTGAGGAAGGACGTGATCGCGCCGTACAAGCACGTCGTCCCCTCCCTCGGCGACGGCGACTCGCCGGGGTTCGAGCAGCGCCCCGTCCTCGCTTACTTCCAGGGCGCCATTCATAGGAAAAATGGTGGAAGGGTTCGTCAGAGGCTGTACCAGCTGATCAAGGACGAGAAGGACGTCCACTTCACCTACGGCAGCGTCCGTCAGAACGGCATCAGGCGCGCCACCAAGGGGATGGCCTCCTCCAAGTTCTGCCTCAACATCGCCGGCGACACCCCCTC CTCCAACCGCCTCTTCGACGCCATCGTCAGC CACTGCGTCCCCGTGATCATCAGCGACGACATCGAGCTCCCCTTCGAGGACGTCCTCGACTACTCCGCCTTCTGCGTGTTCGTCCGCGCCTCCGACGCCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCA GGAAGAATGGACGGCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAGTACCAGTACCCTTCGCAGCCTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCATTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACATTTTCTGAATCATAAAAGGTTAGGGTAGCAAAGCATGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCA TGTGGCTGGTAAAGTTCTATGGTCATTTTGCAATCTAAGTTGCAAGGACTATGTGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTATAT                                                 ]
[+] EMBL AU172581             [                                                                                                                                                                                                         TCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAACCAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGTCGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGCACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCTCCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCGGCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAGCGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGGCGATGATCACCCGGCAGCCGTCGTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI813436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gcaGACACCCCCTCTCTCCAACCGCCTCTTCGACGCCATCGTCAGCACACTGCGTCCCCGTGATCATCAGCGACGACATCGAGCTCCCCTTCGAGGACGTCCTCGACTACTCCGACTTCTGCGTGTTCGTCCGCGCCTCCGACGCCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCACGGAAGAATGGACGGCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAGTACC GTACCCTTCGCAGCCTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCATTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACACTTTCTGAATCATAAAAGGTTAGGGTAGC AAGCCTGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATC ATAATTTTCACTGTGGCTGGTAAAGTTCTATGGTCCTTTTGCAAaaa                                                                                                                         ]
[+] EMBL AU172582             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GATNTCCCA GGAAGAATGGTCGGCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCNCTTCGAGTACCAGTACCCTTNGCAGCCTGGTGACGCTGTTCAAATGATCTGGGGAGCTGTAGCTCGGAAAATGCATTTGGTGAAGCTGCAACTTCNCAAGNGTGGTAGATATCAGAGGACATTTTNTGAATCATAAAAGGTTAGGGTAGCAAAGCATGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCA TGTGGCTGGTAAAGTTCTANNGTNATTTTGCAATNTAAGTTGCAAGGACTATGTGCAGCCAGTCTTTGTCCAANAGGTAATTATTAGACAGTTAGTTATAAATTATATTATTCTTATTAGTTCTTTTATCCCCNAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10007#0
TTCCCGTCGAGCCCTGCAGAAATCTTTCAACAGAAACAGCGAACTAGTAGTAGATGTCAT
CAGGGAAAAGAAAATGAAAAAAAGAACAAAAAAAAAAAACAGAACGAAGACAGCGGCATG
CATCGCAGCATAGGCCGGTCAAGAAGACGATGGCCCTGACGAGGCGCCTCCTCATCGATC
TCTCGTCAAGACGCCGCCTTTTCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAAC
CAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGT
CGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGC
ACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCT
CCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCG
GCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAG
CGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGG
CGATGATCACCCGGCAGCCGTCGTCGGGAGAGACGACGACGACGGCGGCGTTGGCGGCGA
CGTGCGACGCGGAGAGCGCGCTGCTGAGGGTGTACCTCTACGACCTCCCGCCGGAGTTCC
ACTTCGGCATGCTGGGGTGGGACGGCAAGGCGGCCGGCGCGGCGTGGCCGGACGTGGCCG
GCGACCCGCGCGCCGTGCCGCGCTACCCGGGCGGCCTGAACCTGCAGCACAGCGTCGAGT
ACTGGCTCACCCTGGACATCCTCTCCTCCACCACCTCCGGCGACCACCGCCGCCGCCGTC
CGTGCACCGCCGTGAGGGTGACGAACGCGAGCCTTGCCGACGTGTTCCTGGTGCCGTTCT
TCGCGTCGCTGAGCTACAACCGGCAGTCGAAGTCGCCGCACGGCGGCCATGGGAGTGGCG
GCCGGAGCGACAGGCAGCTGCAGGGCGAGCTGGTGAGGTACCTGGCGAGGCGGGAGGAGT
GGCGGCGGTGGGGCGGCGCGGACCACCTCGTCGTGCCGCACCACCCGAACAGCATGATGG
ACGCCCGGCGGCGGCTCAGCGCCGCCATGTTCGTCCTCTCCGACTTCGGCAGGTACCCGC
CGGACGTCGCCAACCTGAGGAAGGACGTGATCGCGCCGTACAAGCACGTCGTCCCCTCCC
TCGGCGACGGCGACTCGCCGGGGTTCGAGCAGCGCCCCGTCCTCGCTTACTTCCAGGGCG
CCATTCATAGGAAAAATGGTGGAAGGGTTCGTCAGAGGCTGTACCAGCTGATCAAGGACG
AGAAGGACGTCCACTTCACCTACGGCAGCGTCCGTCAGAACGGCATCAGGCGCGCCACCA
AGGGGATGGCCTCCTCCAAGTTCTGCCTCAACATCGCCGGCGACACCCCCTCCTCCAACC
GCCTCTTCGACGCCATCGTCAGCCACTGCGTCCCCGTGATCATCAGCGACGACATCGAGC
TCCCCTTCGAGGACGTCCTCGACTACTCCGCCTTCTGCGTGTTCGTCCGCGCCTCCGACG
CCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCAGGAAGAATGGACGG
CAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAGTACCAGTACCCTTCGCAGC
CTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCATTTGGTGAAGC
TGCAACTTCACAAGCGTGGTAGATATCAGAGGACATTTTCTGAATCATAAAAGGTTAGGG
TAGCAAAGCATGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCAT
GTGGCTGGTAAAGTTCTATGGTCATTTTGCAATCTAAGTTGCAAGGACTATGTGCAGCCA
GTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTATATTATTCTTATTAGT
TCTTTTATCCCCNAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TCTCCCAGGGAAGAATGACGCACATTGTGGAGGAGCTGAAGGAGGTTGCACACCACTTCGAGGTACCAGTACCCTTCGCAGCCTGGTGACCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCACTTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACACTTTCTGAATCATAAAAGGTTAGGGTAGCCAAGCACTGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCATGTGGCTGGTAAAGTTCTATGGTCATTTTGCATCTAAGTTGCAAGGACTATGTCGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTACTCCCTCCGTACTCGTAAAGGAAGTCGTTTAGGACATGTTTAAGTCAACCATGGGAATATAAATCATGAATAACTCTCAAAAAA]

[+] EMBL BI809241             [TCTCCCAGGGAAGAATGACGCACATTGTGGAGGAGCTGAAGGAGGTTGCACACCACTTCGAGGTACCAGTACCCTTCGCAGCCTGGTGACCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCACTTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACACTTTCTGAATCATAAAAGGTTAGGGTAGCCAAGCACTGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGATCAATAATTTTCATGTGGCTGGTAAAGTTCTATGGTCATTTTGCATCTAAGTTGCAAGGACTATGTCGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTACTCCCTCCGTACTCGTAAAGGAAGTCGTTTAGGACATGTTTAAGTCAACCATGGGAATATAAATCATGAATAACTCTCAAAAAA]




>consensus_10007#1
TCTCCCAGGGAAGAATGACGCACATTGTGGAGGAGCTGAAGGAGGTTGCACACCACTTCG
AGGTACCAGTACCCTTCGCAGCCTGGTGACCTGTTCAGATGATCTGGGGAGCTGTAGCTC
GGAAGATGCACTTTGGTGAAGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACACTT
TCTGAATCATAAAAGGTTAGGGTAGCCAAGCACTGGAGGAGATTCAGAGCTATAGGTTGC
AGTTTTTGATCAATAATTTTCATGTGGCTGGTAAAGTTCTATGGTCATTTTGCATCTAAG
TTGCAAGGACTATGTCGCAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTA
TAAATTACTCCCTCCGTACTCGTAAAGGAAGTCGTTTAGGACATGTTTAAGTCAACCATG
GGAATATAAATCATGAATAACTCTCAAAAAA

consensusID : consensus_10007#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [TTTTTTTTTTTACATTTTCAAACTCAACAACTTGAGAGTTATTCATGATTTATATTCCCATGGTTTGACTTAAACATTGTCCTAAACGACTTCCTTTACGAGTACCGAGGGAGTAATTTATAACTAACTGTCTAATAATTACCCCTTGTCTCGCCCTCT]

[+] EMBL CA761061             [TTTTTTTTTTTACATTTTCAAACTCAACAACTTGAGAGTTATTCATGATTTATATTCCCATGGTTTGACTTAAACATTGTCCTAAACGACTTCCTTTACGAGTACCGAGGGAGTAATTTATAACTAACTGTCTAATAATTACCCCTTGTCTCGCCCTCT]




>consensus_10007#2
TTTTTTTTTTTACATTTTCAAACTCAACAACTTGAGAGTTATTCATGATTTATATTCCCA
TGGTTTGACTTAAACATTGTCCTAAACGACTTCCTTTACGAGTACCGAGGGAGTAATTTA
TAACTAACTGTCTAATAATTACCCCTTGTCTCGCCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10007#0      TTCCCGTCGAGCCCTGCAGAAATCTTTCAACAGAAACAGCGAACTAGTAGTAGATGTCAT 60
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CAGGGAAAAGAAAATGAAAAAAAGAACAAAAAAAAAAAACAGAACGAAGACAGCGGCATG 120
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CATCGCAGCATAGGCCGGTCAAGAAGACGATGGCCCTGACGAGGCGCCTCCTCATCGATC 180
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      TCTCGTCAAGACGCCGCCTTTTCAACGCCGGCAAATTCTCCACCACGCACAAGAAGAAAC 240
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CAGTGCTCCATGAAGCGGTGAGTTTGGCTGGATTCTTGCGCTGCTCGCGCGCGCTGGTGT 300
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGTGGATGGTGGCGGAGAGGAAGATGCAGCCATCGCCGGCGGCGCCGCCGGCGGCGGAGC 360
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      ACCGGAGGCGGGCGCTGCTGCGCTACGTGGTGTTCCTCGCGGTCTCCCTCCTCGCCTTCT 420
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CCTGCTGGGCTCTCGTCAGCTCGCGGATCGACGGCGCCGTCCTCGCGGCGACCGCCGGCG 480
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCGAGCATGACGACCACGATGGCATTATTGTTAGAAGCAGCACCCAAGCGGAGATGCCAG 540
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGAGAGGCGGGAACGCGACGTCGCGCGGCGCCGTCGAGGTGGGTGTGGGTACTCCGGCGG 600
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGATGATCACCCGGCAGCCGTCGTCGGGAGAGACGACGACGACGGCGGCGTTGGCGGCGA 660
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGTGCGACGCGGAGAGCGCGCTGCTGAGGGTGTACCTCTACGACCTCCCGCCGGAGTTCC 720
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      ACTTCGGCATGCTGGGGTGGGACGGCAAGGCGGCCGGCGCGGCGTGGCCGGACGTGGCCG 780
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCGACCCGCGCGCCGTGCCGCGCTACCCGGGCGGCCTGAACCTGCAGCACAGCGTCGAGT 840
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      ACTGGCTCACCCTGGACATCCTCTCCTCCACCACCTCCGGCGACCACCGCCGCCGCCGTC 900
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGTGCACCGCCGTGAGGGTGACGAACGCGAGCCTTGCCGACGTGTTCCTGGTGCCGTTCT 960
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      TCGCGTCGCTGAGCTACAACCGGCAGTCGAAGTCGCCGCACGGCGGCCATGGGAGTGGCG 1020
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCCGGAGCGACAGGCAGCTGCAGGGCGAGCTGGTGAGGTACCTGGCGAGGCGGGAGGAGT 1080
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GGCGGCGGTGGGGCGGCGCGGACCACCTCGTCGTGCCGCACCACCCGAACAGCATGATGG 1140
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      ACGCCCGGCGGCGGCTCAGCGCCGCCATGTTCGTCCTCTCCGACTTCGGCAGGTACCCGC 1200
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CGGACGTCGCCAACCTGAGGAAGGACGTGATCGCGCCGTACAAGCACGTCGTCCCCTCCC 1260
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      TCGGCGACGGCGACTCGCCGGGGTTCGAGCAGCGCCCCGTCCTCGCTTACTTCCAGGGCG 1320
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CCATTCATAGGAAAAATGGTGGAAGGGTTCGTCAGAGGCTGTACCAGCTGATCAAGGACG 1380
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      AGAAGGACGTCCACTTCACCTACGGCAGCGTCCGTCAGAACGGCATCAGGCGCGCCACCA 1440
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      AGGGGATGGCCTCCTCCAAGTTCTGCCTCAACATCGCCGGCGACACCCCCTCCTCCAACC 1500
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCCTCTTCGACGCCATCGTCAGCCACTGCGTCCCCGTGATCATCAGCGACGACATCGAGC 1560
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      TCCCCTTCGAGGACGTCCTCGACTACTCCGCCTTCTGCGTGTTCGTCCGCGCCTCCGACG 1620
consensus_10007#1      ------------------------------------------------------------
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      CCGTCAAGAGGGGCTTCCTGCTGCATCTCCTCAGGGGGATCTCCCAGGAAGAATGGACG- 1679
consensus_10007#1      ---------------------------------------TCTCCCAGGGAAGAATGACGC 21
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCAATGTGGAGGAGGCTGAAGGAGGTTGCACACCACTTCGAG-TACCAGTACCCTTCGCA 1738
consensus_10007#1      ACATTGTGGAGGAG-CTGAAGGAGGTTGCACACCACTTCGAGGTACCAGTACCCTTCGCA 80
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GCCTGGTGACGCTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCA-TTTGGTGA 1797
consensus_10007#1      GCCTGGTGAC-CTGTTCAGATGATCTGGGGAGCTGTAGCTCGGAAGATGCACTTTGGTGA 139
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      AGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACATTTTCTGAATCATAAAAGGTTA 1857
consensus_10007#1      AGCTGCAACTTCACAAGCGTGGTAGATATCAGAGGACACTTTCTGAATCATAAAAGGTTA 199
consensus_10007#2      ------------------------------------------------------------
                                                                                   

consensus_10007#0      GGGTAGCAAAGCA-TGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGA-TCAATAATT 1915
consensus_10007#1      GGGTAGCCAAGCACTGGAGGAGATTCAGAGCTATAGGTTGCAGTTTTTGA-TCAATAATT 258
consensus_10007#2      ----------------------------TTTTTTTTTTTACATTTTCAAACTCAACAACT 32
                                                      * *   ** ** ***   * **** ** *

consensus_10007#0      TTCATGTGGCTGGTAAAGTTCTATGGTCATTTTGCAATCTAAGTTGCAAGGACTATGT-G 1974
consensus_10007#1      TTCATGTGGCTGGTAAAGTTCTATGGTCATTTTGCA-TCTAAGTTGCAAGGACTATGTCG 317
consensus_10007#2      TGAGAGTTATTCATGA---TTTATATTC---CCATGGTTTGACTTA----AACATTGTCC 82
                       *    **   *  * *   * ***  **         * * * **      **  ***  

consensus_10007#0      CAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTATATTATTCTT 2034
consensus_10007#1      CAGCCAGTCTTTGTCCAAGAGGTAATTATTAGACAGTTAGTTATAAATTACTCCCTCCGT 377
consensus_10007#2      TAAACGA-CTTCCTTTACGAG-TACCGAGGGAGTAATTTATAACTAACTGTCTAATAATT 140
                        *  *   ***  *  * *** **   *      * **  * *  ** *      *   *

consensus_10007#0      ATTAGT--------TCTTTTATCCCCNA---AAAAAAAAAAAAAAAAAAAAAA------- 2076
consensus_10007#1      ACTCGTAAAGGAAGTCGTTTAGGACATGTTTAAGTCAACCATGGGAATATAAATCATGAA 437
consensus_10007#2      ACCCCT--------TGTCTCGCCCTCT--------------------------------- 159
                       *    *        *   *                                         

consensus_10007#0      --------------
consensus_10007#1      TAACTCTCAAAAAA 451
consensus_10007#2      --------------