These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 843 fasta sequence [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC-----ACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCATGATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGCTTGCTTCGTCAAAAAA] [+] EMBL AK073977 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTGCCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACT ] [+] EMBL CF315011 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGAC ] [+] EMBL CF295976 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAA ] [-] EMBL CF315012 [ CCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC ACTTGGCAATAAGTACTGTTCGACAAAAAA ] [-] EMBL CF295975 [ TACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCAGTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC ACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCATGATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGCTTGCTTCGTCAAAAAA] consensusID : consensus_10011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGGTAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGCGGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAAA] [+] EMBL BI806779 [TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGGTAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGCGGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAAA] consensusID : consensus_10011#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GGCCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCCGTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTGCCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTTGGCAATAAGTTCTGTTTGGCAAAAAAAAGAACCCAAGTTCCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA754245 [GGCCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCCGTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTGCCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTTGGCAATAAGTTCTGTTTGGCAAAAAAAAGAACCCAAGTTCCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10011#0 GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCC 60 consensus_10011#1 ------------------------------------------------------------ consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 AGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAG 120 consensus_10011#1 ------------------------------------------------------------ consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 CTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTG-CCGCCAGCGAAGG 179 consensus_10011#1 -------------TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGG 47 consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 -AAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCG-GC 237 consensus_10011#1 TAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGC 107 consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 GGCACCGTGCTGGGCAGG-GCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAA 296 consensus_10011#1 GGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAA 167 consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 CAAA--ACTGGAGCTGCCCAGGAAGCT-ATAAATGGTATTCGAAGGGCCAGCAAGGCCAT 353 consensus_10011#1 CANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCAT 227 consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 GACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGAT 413 consensus_10011#1 GACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGAT 287 consensus_10011#2 ----------------------------------------------------------GG 2 consensus_10011#0 CGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCA 473 consensus_10011#1 CGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCA 347 consensus_10011#2 CCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCC 62 * ***** **** ********************************** * * *** consensus_10011#0 GTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACC 533 consensus_10011#1 GTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACC 407 consensus_10011#2 GTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACC 122 ********** ****** ******* ** ******************* *********** consensus_10011#0 TAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTG 593 consensus_10011#1 TAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTG 467 consensus_10011#2 TAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTG 182 ********************** ***************** *** *************** consensus_10011#0 CCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTT----- 648 consensus_10011#1 CCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTT 527 consensus_10011#2 CCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTT----- 237 ********* ************** ************************** *** consensus_10011#0 GGCAATAAGTACTGTTCGACAAAAAAAA-GAACACAAGTTCCACCGATTTCCATCCGCTG 707 consensus_10011#1 GGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAA 587 consensus_10011#2 GGCAATAAGTTCTGTTTGGCAAAAAAAA-GAACCCAAGTTCCCCCGGAAAAAAAAAAAAA 296 ********** ***** * ********* **** ******** *** * consensus_10011#0 TACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCAT 767 consensus_10011#1 A----------------------------------------------------------- 588 consensus_10011#2 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 316 consensus_10011#0 GATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGC 827 consensus_10011#1 ------------------------------------------------------------ consensus_10011#2 ------------------------------------------------------------ consensus_10011#0 TTGCTTCGTCAAAAAA 843 consensus_10011#1 ---------------- consensus_10011#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||