|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 915 fasta sequence
[GATGACTCCACAAAAGCTCCCTGACCTTGTTGAACACAATCCACTCATTGCTGTTGAAATTCTTTCGAAATTGATGAACTCTCCTGACATTGATGGTTACTTAGATGTTCTTGTGCATATGGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTTGATATAATGGTCAATATCTGTAGCGTAATTGGGCAAAGAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAGCATAGTCGGACATTCTGTGTTAACACCAAGCCTGCCAGTGGTCTGCAGTTTTATACAGCAAGGTTGCGGCGTCTTGGTTTCTGTCAGCTTAAATTCCTGTGCACGGAAGACAGCTTGTTGAATACATCGTTTCCAT]
[+] EMBL AK059540 [GATGACTCCACAAAAGCTCCCTGACCTTGTTGAACACAATCCACTCATTGCTGTTGAAATTCTTTCGAAATTGATGAACTCTCCTGACATTGATGGTTACTTAGATGTTCTTGTGCATATGGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTTGATATAATCTTCAATATCTGTAGCGTAATTGGGCAAAGAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAGCATAGTCGGACATTCTGTGTTAACACCAAGCCTGCCAGTGGTCTGCAGTTTTATACAGCAAGGTTGCGGCGTCTTGGTTTCTGTCAGCTTAAATTCCTGTGCACGGAAGACAGCTTGTTGAATACATCGTTTCCAT]
[-] EMBL CB642626 [ AGCTCCCTGACCTTGTTGAACACAATCCACTCATTGCTGTTGAAATTCTTTCGAAATTGATGAACTCTCCTGACATTGATGGTTACTTAGATGTTCTTGTGCATATGGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTGGATATAATGGTCAATATCTGTAGCGTAATT ]
[-] EMBL CB642667 [ CTCCCTGACCTTGTTGAACACAATCCACTCATTGCTGTTGAAATTCTTTCGAAATTGATGAACTCTCCTGACATTGATGGTTACTTAGATGTTCTTGTGCATATGGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACGGGGTTCAAACTTAGATCTcc ]
[-] EMBL CB642460 [ TGACATTGATGGTTACTTAGATGTTCTTGTGCATATGGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCCGACAGGGAGGGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTTTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACTGGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATA ]
[-] EMBL CB642425 [ CATGAGTACATCTGGAATTCCATCCAATCATGTCCGCACGTTAAGGATAAATACATTCAGAACAGGTGGGTGAGACTAGTTTGTGGTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAACCGTTCAAGACCTCTTCATCGAGGTACAAGCTTTTTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATTTTTGGAGTGAAGAAATGAACTATATGTTGGTGGTATTGTCATCAAATGTTTGGAGATTTGTGGTTTTGGGTTAGTTCTCTGGGCTCTGGGTGCTCAAG ]
[+] EMBL AU172360 [ AGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTTGATATAAaaaaaaaa ]
consensusID : consensus_10022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAATGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAGGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTTGATATAATCTTCAATATCTGTAGCGTAATTGGGCAAAAGAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCNGGCCGNCACCCGCG]
[+] EMBL CA764532 [CAGGCTTACTACTGCTGTAGAACTCCCGACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAATGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTTCTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAATGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGTTCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCAGCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAGGACTATACCAAGAACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTGTACGGTGACAAATAATAGATGCATGTTTTTGATATAATCTTCAATATCTGTAGCGTAATTGGGCAAAAGAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCNGGCCGNCACCCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10022#0 GATGACTCCACAAAAGCTCCCTGACCTTGTTGAACACAATCCACTCATTGCTGTTGAAAT 60
consensus_10022#1 ------------------------------------------------------------
consensus_10022#0 TCTTTCGAAATTGATGAACTCTCCTGACATTGATGGTTACTTAGATGTTCTTGTGCATAT 120
consensus_10022#1 ------------------------------------------------------------
consensus_10022#0 GGAGATGAGCCTGCATTCTATGGAAGTTGTAAACAGGCTTACTACTGCTGTAGAACTCCC 180
consensus_10022#1 ---------------------------------CAGGCTTACTACTGCTGTAGAACTCCC 27
***************************
consensus_10022#0 GACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGA 240
consensus_10022#1 GACAGAGTTTGTCCATGAGTACATCTCGAATTGCATCCAATCATGTCAGAACGTTAAGGA 87
************************************************************
consensus_10022#0 TAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCG 300
consensus_10022#1 TAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCG 147
************************************************************
consensus_10022#0 AAACAAGATCATAAACGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTT 360
consensus_10022#1 AAACAAGATCATAAATGTTCAAGACCTCTTCATCGAGGTACAAGCTTTCTGCATTGAGTT 207
*************** ********************************************
consensus_10022#0 CTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAA 420
consensus_10022#1 CTCACGGATAAGGGAAGCAGCTGGCTTATTCCGGCTGCTCAAATCTTTGGAGTGAAGAAA 267
************************************************************
consensus_10022#0 TGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGT 480
consensus_10022#1 TGAATTATATGTTGGTCGTATCGTCATCAAATGTTTGGAGATTTCTGGTTTTGGGTTAGT 327
************************************************************
consensus_10022#0 TCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCA 540
consensus_10022#1 TCTCTGGACTCTGGGTGCTCAAGGCCTGGTGATGTGTACCATTTTCTATCAGAATCTGCA 387
************************************************************
consensus_10022#0 GCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAAGACTATACCAAG 600
consensus_10022#1 GCACACCCTCCTTACAGCAGTGCACACGCTTGAAAGAGTTATTAAGAGGACTATACCAAG 447
*********************************************** ************
consensus_10022#0 AACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTG 660
consensus_10022#1 AACAGATTCAGTACTCAATTTATACTCGGTGCAAAGTTAGATCTGCTTGTAAGTCCACTG 507
************************************************************
consensus_10022#0 TACGGTGACAAATAATAGATGCATGTTTTTGATATAATGGTCAATATCTGTAGCGTAATT 720
consensus_10022#1 TACGGTGACAAATAATAGATGCATGTTTTTGATATAATCTTCAATATCTGTAGCGTAATT 567
************************************** ********************
consensus_10022#0 GGGCAAA-GAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAG 779
consensus_10022#1 GGGCAAAAGAAAAACATTCTGTCACTAATTATTCTTGTAGTATATGTTTACTCGGTGCAA 627
******* ***************************************************
consensus_10022#0 CATAGTCGGACATTCTGTGTTAACACCAAGCCTGCCAGTGGTCTGCAGTTTTATACAGCA 839
consensus_10022#1 AAAAAAAAAAAA----AAAAAAAAAAAAAAGCNGGCCGNCACCCGCG------------- 670
* * * * ** * ** * * * * * **
consensus_10022#0 AGGTTGCGGCGTCTTGGTTTCTGTCAGCTTAAATTCCTGTGCACGGAAGACAGCTTGTTG 899
consensus_10022#1 ------------------------------------------------------------
consensus_10022#0 AATACATCGTTTCCAT 915
consensus_10022#1 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||