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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence
[GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAAGAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGGAAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTTAAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA-CTG-CTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGG-TATTCGCAGCAGTCT-GAACCGATCCAATCTTAGGCTTTCTGCTTT-GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCC-TTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG-CAGAGTTTTTTGTTGTATG-CCAGTGTTACTTCTCTTTCTCACAGCC-AAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA]
[+] EMBL AK069401 [GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAAGAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGGAAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTTAAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCAGCTG CTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGG TATTCGCAGCAGTCT GAACCGATCCAATCTTAGGCTTTCTGCTTT GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCC TTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG CAGAGTTTTTTGTTGTATG CCAGTGTTACTTCTCTTTCTCACAGCC AAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTAT ]
[+] EMBL AU056937 [ GCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA NTGACTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGGTTATTCGCAGCAGTCTGGAACCGATCCAATCTTAGGCTTTCTGCTTTGGGAGCGGGATGCCAAGAAGGG ]
[+] EMBL AU057052 [ GCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA CTGTCTTACCAAGCAATGGGCCAAATTTNAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGA ]
[-] EMBL CB630696 [ ATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACATGCCTTCAGAAAAATCAGATGG TATTCGCAGCAGTCT GAACCGATCCAATCTTAGGCTTTCTGCTTT GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTATGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCGTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCCTTTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG CAGAGGTTTTTGTTGTATG CCAGTGTTACTTCTCTTTCT ]
[+] EMBL AU057053 [ CAGGTTTGCGTCTCTTGGTGTGCCAGAGTTTTTTGTTGTATGCCCAGTGTTACTTCTCTTTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA]
[+] EMBL AU056938 [ AATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA]
consensusID : consensus_10027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTTTGTAACACACAGAGGGCAGGATTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA]
[+] EMBL CA757672 [CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTTTGTAACACACAGAGGGCAGGATTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10027#0 GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAA 60
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGG 120
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 AAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTT 180
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 AAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTAC 240
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 ACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAAC 300
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 CGCGCACTGCTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAG 360
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 CCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAAC 420
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 TTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGA 480
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGGTATTCGCAGCAGTC 540
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 TGAACCGATCCAATCTTAGGCTTTCTGCTTTGGAGCGGGATGCCAAGAAGGGGATCTCAC 600
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 TGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGG 660
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 CATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAA 720
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTG 780
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 ACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATT 840
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTT 900
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACA 960
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 ATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAAT 1020
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GCATAATGGATCAGTCCTACCCTTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAG 1080
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 TTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGA 1140
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 GTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTGCAGAGTTTTTTGTTGTATGCCAGTG 1200
consensus_10027#1 ------------------------------------------------------------
consensus_10027#0 TTACTTCTCTTTCTCACAGCCAAAAAAAAAAA-GGTGTGCATAGATCCAATGGTATGTAT 1259
consensus_10027#1 ---CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTAT 57
******* ********************* ***************************
consensus_10027#0 AGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATT 1319
consensus_10027#1 AGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATT 117
************************************************************
consensus_10027#0 TACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTT 1379
consensus_10027#1 TACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTT 177
*********************************************** ************
consensus_10027#0 TGTAA----------GCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTA 1429
consensus_10027#1 TGTAACACACAGAGGGCAGGATTTTTTTTT-CTTTTTACCCTTTGAAGCTGCCCTCAGTA 236
***** *************** *****************************
consensus_10027#0 CAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCT 1489
consensus_10027#1 CAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCT 296
************************************************************
consensus_10027#0 GCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA------ 1531
consensus_10027#1 GCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA 344
******************************** *********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||