|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence
[CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC-TTTCCATCTCCACT-GCATACTCAAGT-GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCTCTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATTGTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTTTTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACCCTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGAGACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT]
[+] EMBL AK112010 [CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCTCTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATTGTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTTTTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACCCTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGAGACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT]
[+] EMBL AU065611 [ TCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGA NTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTTCCATCTCCACTGGCATACTCAAGTGGGGTCAATTCTC AACATCCANACCACTTTGnc ]
[+] EMBL AK121656 [ AGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATC ]
[+] EMBL CA305829 [ CCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTT ]
[+] EMBL BI804255 [ CCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCC ATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCAC ATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGC AATGAATTGTTACATTTGAAAGGCTGAATAAaaa ]
consensusID : consensus_10034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[CGCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030058 [CGCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[GGAGCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTCTTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTCGACGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTGCAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC]
[+] EMBL OSC18641 [GGAGCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTCTTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTCGACGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTGCAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10034#0 CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCT 60
consensus_10034#2 -----------GGAGC-GGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCT 48
consensus_10034#1 ------------------------------------------CGCACCACTGCTCCAGCT 18
****************
consensus_10034#0 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCT 120
consensus_10034#2 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAG-TCAAGGCT 107
consensus_10034#1 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCT 78
*************************************************** ********
consensus_10034#0 TCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGC 180
consensus_10034#2 TCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTC 167
consensus_10034#1 TCCTCTCC-CTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGC 137
******** ********************************************** ** *
consensus_10034#0 TTCTTGGACATG-GGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTC--GA 237
consensus_10034#2 TTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTC--GA 225
consensus_10034#1 TTCTTGGACATG-GGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAA 196
** * ***** **** ***** *********** ***** ************ *
consensus_10034#0 CGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTG 297
consensus_10034#2 CGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTG 285
consensus_10034#1 CGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTG 256
********* **************************** * ** ****************
consensus_10034#0 CAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACC 357
consensus_10034#2 CAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC--------- 336
consensus_10034#1 CAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACC 316
*** **** ******* * **** ***** ****************** *
consensus_10034#0 ACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATA 417
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATA 376
consensus_10034#0 TCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAAC 477
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 TCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAAC 436
consensus_10034#0 TTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACA 537
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 TTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAA 496
consensus_10034#0 ATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGAT 597
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 AAAAAAAAAAAAAA---------------------------------------------- 510
consensus_10034#0 CGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCT 657
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ------------------------------------------------------------
consensus_10034#0 CTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATT 717
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ------------------------------------------------------------
consensus_10034#0 GTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTT 777
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ------------------------------------------------------------
consensus_10034#0 TTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACC 837
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ------------------------------------------------------------
consensus_10034#0 CTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGA 897
consensus_10034#2 ------------------------------------------------------------
consensus_10034#1 ------------------------------------------------------------
consensus_10034#0 GACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT 953
consensus_10034#2 --------------------------------------------------------
consensus_10034#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||