|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1906 fasta sequence
[AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAGCCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTGTTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTATCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTAAGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAGCTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAACTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAAGCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCTTCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA-AGAGTGCTTGTTACTTCTTCAAGA-TTGGAAAGGAACATATCATC-GATGCCACCC-GCAAGGGTGGGATCGCAAGATTCATC-AACCACTCTTGCCAACCAAACTGTG-TCG-C-A--AAAATAATCTCAGTAAGGA-A-CGAGAAGAAGGTAGTGTTC-TTCGCGGAAC-GCCACATAAATCCGGGGGAG-G-AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA-TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA-TTGTAATGTGCGCACTGTATATATGAATAAACTGTA-GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAATCCTCTCCCAGTGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCTTGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGTGCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA]
[+] EMBL AK112101 [AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAGCCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTGTTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTATCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTAAGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAGCTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAACTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAAGCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCTTCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA AGAGTGCTTGTTACTTCTTCAAGA TTGGAAAGGAACATATCATC GATGCCACCC GCAAGGGTGGGATCGCAAGATTCATC AACCACTCTTGCCAACCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGG ]
[-] EMBL CB648083 [ TATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA AGAGTGCTTGTTACTTCTTCAAGA TTGGAAAGGAACATATCATC GATGCCACCC GCAAGGGTGGGATCGCAAGATTCATC AACCACTCTTGCCAACCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCACCCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAACCA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACT ]
[+] EMBL BI805724 [ gtCTGACNAAAGAGAGATTGAATACCAGTCCGGGTAACGGCAGCAATATATAGAGTGCTTGNTACTTCTTCAAGATTTGGAAAGGAACATATCATCTGATGCCACCCTGCAAGGGTGGGATCGCAAGATTCATCTAACCACTCTTGCCAACC AACTGTT TCG CTATTANAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG GTAAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATACTCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCC AACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAA ]
[+] EMBL AU058151 [ tgctggatCAGCCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC G CACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAAAAa ]
[+] EMBL OSC1161 [ tgctggatCAGCCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGNAGGTAGTGTTC TTCGCGGAAC GCACCATAAATCCNGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTNCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATNAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCC ]
[+] EMBL BM037952 [ ctAATCTGTGTTCGCC AT ATATTATTCTCAGTAAGGATACCGAGAAGAAGTTAGTGTTCTTTCGCGGTACNTCCACATAAATCCGGGGGAGNG AAATTACCTACGATTAGCACTTCAACCGAGAAGATGAA GGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCT CAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACACTTGTAATGTGCGCACTGTATATATGAATAAACTGTATGGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGGATTTAGAA TTAATTTAGACTTCCTCTCCCAGTGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCTTGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGTGCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA]
consensusID : consensus_10036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNNNTNNNNNNNGNAAGGGNNNCNNNNTTGG]
[+] EMBL CF196428 [TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNNNTNNNNNNNGNAAGGGNNNCNNNNTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10036#0 AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAG 60
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 CCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTG 120
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTA 180
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTA 240
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 AGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAG 300
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 CTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAA 360
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 CTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAA 420
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 GCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCT 480
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACA 540
consensus_10036#1 -----------TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACA 49
*************************************************
consensus_10036#0 TTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGC 600
consensus_10036#1 TTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGC 109
************************************************************
consensus_10036#0 AGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCA 660
consensus_10036#1 AGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCA 169
************************************************************
consensus_10036#0 CAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAA 720
consensus_10036#1 CAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAA 229
************************************************************
consensus_10036#0 TGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCT 780
consensus_10036#1 TGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCT 289
************************************************************
consensus_10036#0 TTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATA 840
consensus_10036#1 TTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATA 349
************************************************************
consensus_10036#0 ATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATG 900
consensus_10036#1 ATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATG 409
************************************************************
consensus_10036#0 TTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTT 960
consensus_10036#1 TTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNN 469
********************************************************
consensus_10036#0 TTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGT 1020
consensus_10036#1 NTNNNNNNNGNAAGGGNNNCNNNNTTGG-------------------------------- 497
* * ***** * ****
consensus_10036#0 TTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGA 1080
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 AATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGC 1140
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 ATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTC 1200
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 CACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACA 1260
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 AAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATAAGAGTGCTTGTTACTTCT 1320
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TCAAGATTGGAAAGGAACATATCATCGATGCCACCCGCAAGGGTGGGATCGCAAGATTCA 1380
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TCAACCACTCTTGCCAACCAAACTGTGTCGCAAAAATAATCTCAGTAAGGAACGAGAAGA 1440
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 AGGTAGTGTTCTTCGCGGAACGCCACATAAATCCGGGGGAGGAAATTACCTACGATTATC 1500
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 ACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCA 1560
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 GGAGATATCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACAT 1620
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TGTAATGTGCGCACTGTATATATGAATAAACTGTAGGGACTTAATCTGGCACTGATAATT 1680
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TAGACATCCAAACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAATCCTCTCCCAG 1740
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCT 1800
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 TGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGT 1860
consensus_10036#1 ------------------------------------------------------------
consensus_10036#0 GCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA 1906
consensus_10036#1 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||