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Oryza sativa
cluster # 10047 cluster # 10047       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10047#0 length = 1372 sequences # 6  
consensus_10047#1 length = 396 sequences # 1  

consensusID : consensus_10047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1372
fasta sequence
                              [CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG-TTTGGAAGG-AGGGTGCAGCTGGGCAATGGTC-TCAGGCTCACGTA-TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT-GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT-CAATGGCAGCTGGAAGCTGGATAGCGTTCTG-CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT-AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT-GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA]

[+] EMBL AK103569             [CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGAAGG AGGGTGCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT CAATGGCAGCTGGAAGCTGGATAGCGTTCTG CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAAT                      ]
[+] EMBL C26353               [       TCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCT     GGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTTGGAAGGAAGGGTGCAGCTGGGCAATGGTCTTAAGGCTCACGTATTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSC28161             [                                                                                   AGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTNTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGNAGG AGGGTTCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU081239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTCTGGGTGGCTCCGACTGTGTTGTCAAGGTGTGGNCTTTTGTCCAATGNCAGCTGGAAGCTGGATAGCGTTCTGCCCCTCCGACATGCACACGGA TGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA]
[+] EMBL AU077732             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTGGATAGCGTTCTG CNCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAANGTGACCAAGGTGGAGCCATAAGGAAGCCTCGGCTGTGGCCTGCAGTTTTCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAACAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTNGGATG                                                                                                                                                                                         ]
[+] EMBL AU077733             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GACCAAGGGGAAAGAGGNCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAaaaa                                                              ]


>consensus_10047#0 CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCT CCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAA GTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGG ACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAG ACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAA CCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTT CGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTGGAAGGAGGGTGCAGCTG GGCAATGGTCTCAGGCTCACGTATTCGACAACCACAAGTCTTCACTCAACTCCATTGCTT GGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTG TCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTG TTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAG GGGAACTTGTCCAGAAGCTCGTCTCTGGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTT TTGTCAATGGCAGCTGGAAGCTGGATAGCGTTCTGCCCTCCGACATGCACACGGACTGCG TTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCT CTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGA AGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACA TACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTC AGTGGGAGAAGGTGACCAAGGTGGAGCCATAGGAAGCCTCGGCTGTGGCCTGCAGTTTGC ATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTAC TGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTGGATGGATGTTGTTCTTA CCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTT CTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCC TTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA



consensusID : consensus_10047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA]

[+] EMBL BM420668             [TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA]


>consensus_10047#1 TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCG AGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGC TCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGG TGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATA CATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTAT CATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTA GACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10047#0      CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCT 60
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      CCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAA 120
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      GTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGG 180
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      ACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAG 240
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      ACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAA 300
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      CCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTT 360
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      CGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTGGAAGGAGGGTGCAGCTG 420
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      GGCAATGGTCTCAGGCTCACGTATTCGACAACCACAAGTCTTCACTCAACTCCATTGCTT 480
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      GGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTG 540
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      TCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTG 600
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      TTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAG 660
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      GGGAACTTGTCCAGAAGCTCGTCTCTGGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTT 720
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      TTGTCAATGGCAGCTGGAAGCTGGATAGCGTTCTGCCCTCCGACATGCACACGGACTGCG 780
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      TTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCT 840
consensus_10047#1      ------------------------------------------------------------
                                                                                   

consensus_10047#0      CTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGA 900
consensus_10047#1      ---------------TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAA-TGGGAAGGGA 44
                                      ********************************** **********

consensus_10047#0      AGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGG-AAAC 959
consensus_10047#1      AG-TGAT-CATGACTTCGAGGCTCCGGCATGGAGGTT-TCCTGGTCACTGACCGGTAAAC 101
                       ** **** *************************** * ***************** ****

consensus_10047#0      ATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGT 1019
consensus_10047#1      ATACTGTCCGTGC--GCCGGCTCCGGCGATATCACCCTGTGGAAGGAG-CATCAGATG-T 157
                       ************   ******************** ************ ********* *

consensus_10047#0      CAGTGGGAGAAGGTG-ACCAAGGTGGAGCCATAGGAAGCCTCGGCTGTGGCCTGCAGTTT 1078
consensus_10047#1      CAGTGGGAGAAGGTGTACCAAGGTGGA-CCATAGGAAGCCTCG-CTGTG--CCTCAGTTN 213
                       *************** *********** *************** *****  *  ***** 

consensus_10047#0      GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGT 1138
consensus_10047#1      GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAC--ATGGAATCCCCGAGTGT 271
                       ****************************************   ********* *******

consensus_10047#0      ACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTGGATGGATGTTGTTCT 1198
consensus_10047#1      ACTGATAGATACC--AATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCT 329
                       ************   ********** ***************** ****************

consensus_10047#0      TACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGT 1258
consensus_10047#1      TACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGG--CCATGGTGTT 387
                       ****************** ********************** * ****  * ****** *

consensus_10047#0      TTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTT 1318
consensus_10047#1      AAAAAAAAA--------------------------------------------------- 396
                            *  *                                                   

consensus_10047#0      CCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA 1372
consensus_10047#1      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)