These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1372 fasta sequence [CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG-TTTGGAAGG-AGGGTGCAGCTGGGCAATGGTC-TCAGGCTCACGTA-TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT-GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT-CAATGGCAGCTGGAAGCTGGATAGCGTTCTG-CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT-AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT-GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA] [+] EMBL AK103569 [CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGAAGG AGGGTGCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT CAATGGCAGCTGGAAGCTGGATAGCGTTCTG CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAAT ] [+] EMBL C26353 [ TCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCT GGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTTGGAAGGAAGGGTGCAGCTGGGCAATGGTCTTAAGGCTCACGTATTTCGA ] [+] EMBL OSC28161 [ AGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTNTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGNAGG AGGGTTCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAG ] [+] EMBL AU081239 [ TCTCTGGGTGGCTCCGACTGTGTTGTCAAGGTGTGGNCTTTTGTCCAATGNCAGCTGGAAGCTGGATAGCGTTCTGCCCCTCCGACATGCACACGGA TGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA] [+] EMBL AU077732 [ CTGGATAGCGTTCTG CNCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAANGTGACCAAGGTGGAGCCATAAGGAAGCCTCGGCTGTGGCCTGCAGTTTTCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAACAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTNGGATG ] [+] EMBL AU077733 [ GACCAAGGGGAAAGAGGNCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAaaaa ] consensusID : consensus_10047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA] [+] EMBL BM420668 [TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10047#0 CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCT 60 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 CCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAA 120 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 GTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGG 180 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 ACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAG 240 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 ACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAA 300 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 CCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTT 360 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 CGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTGGAAGGAGGGTGCAGCTG 420 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 GGCAATGGTCTCAGGCTCACGTATTCGACAACCACAAGTCTTCACTCAACTCCATTGCTT 480 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 GGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTG 540 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 TCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTG 600 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 TTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAG 660 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 GGGAACTTGTCCAGAAGCTCGTCTCTGGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTT 720 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 TTGTCAATGGCAGCTGGAAGCTGGATAGCGTTCTGCCCTCCGACATGCACACGGACTGCG 780 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 TTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCT 840 consensus_10047#1 ------------------------------------------------------------ consensus_10047#0 CTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGA 900 consensus_10047#1 ---------------TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAA-TGGGAAGGGA 44 ********************************** ********** consensus_10047#0 AGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGG-AAAC 959 consensus_10047#1 AG-TGAT-CATGACTTCGAGGCTCCGGCATGGAGGTT-TCCTGGTCACTGACCGGTAAAC 101 ** **** *************************** * ***************** **** consensus_10047#0 ATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGT 1019 consensus_10047#1 ATACTGTCCGTGC--GCCGGCTCCGGCGATATCACCCTGTGGAAGGAG-CATCAGATG-T 157 ************ ******************** ************ ********* * consensus_10047#0 CAGTGGGAGAAGGTG-ACCAAGGTGGAGCCATAGGAAGCCTCGGCTGTGGCCTGCAGTTT 1078 consensus_10047#1 CAGTGGGAGAAGGTGTACCAAGGTGGA-CCATAGGAAGCCTCG-CTGTG--CCTCAGTTN 213 *************** *********** *************** ***** * ***** consensus_10047#0 GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGT 1138 consensus_10047#1 GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAC--ATGGAATCCCCGAGTGT 271 **************************************** ********* ******* consensus_10047#0 ACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTGGATGGATGTTGTTCT 1198 consensus_10047#1 ACTGATAGATACC--AATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCT 329 ************ ********** ***************** **************** consensus_10047#0 TACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGT 1258 consensus_10047#1 TACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGG--CCATGGTGTT 387 ****************** ********************** * **** * ****** * consensus_10047#0 TTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTT 1318 consensus_10047#1 AAAAAAAAA--------------------------------------------------- 396 * * consensus_10047#0 CCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA 1372 consensus_10047#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||