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Oryza sativa
cluster # 10050 cluster # 10050       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10050#0 length = 1288 sequences # 1  
consensus_10050#1 length = 973 sequences # 5  
consensus_10050#2 length = 712 sequences # 1  

consensusID : consensus_10050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1288
fasta sequence
                              [GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAACATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCACTCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTCATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTCAACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCGCTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGCGAAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCTGTACATAGTCTCTGTTCCTCTTGTAGTCTTGTAGCAAACGATTATCTAGATGTAGTTCTTATTTCTGAATATGTTCTTCTCATGCTCCAGAGCTCAGCAATCAGCATAACCTCCAGAACTTAACCTAAGTACATAACTATGCCACTTTCCCCTTTTTCAAACCAGAATTTGAATTACATTACACCAAATAAACTTCTCCTAAATTGAAACATTACTAGTTGTGTAGTTTCATTTTTTGAACTATCAGATTAGAATTTCCACTACTACGACTTGAATTTAGAGCCTTCTGAATTACTCAAGGCATCTGATTGCTACAAGCTATGAAATGAAACACCATGC]

[+] EMBL AK100683             [GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAACATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCACTCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTCATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTCAACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCGCTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGCGAAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCTGTACATAGTCTCTGTTCCTCTTGTAGTCTTGTAGCAAACGATTATCTAGATGTAGTTCTTATTTCTGAATATGTTCTTCTCATGCTCCAGAGCTCAGCAATCAGCATAACCTCCAGAACTTAACCTAAGTACATAACTATGCCACTTTCCCCTTTTTCAAACCAGAATTTGAATTACATTACACCAAATAAACTTCTCCTAAATTGAAACATTACTAGTTGTGTAGTTTCATTTTTTGAACTATCAGATTAGAATTTCCACTACTACGACTTGAATTTAGAGCCTTCTGAATTACTCAAGGCATCTGATTGCTACAAGCTATGAAATGAAACACCATGC]


>consensus_10050#0 GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAAC ATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCAC TCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTC ATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTC AACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCG CTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATG TTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATG GAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCC GACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAG GGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGCTGTTCAACGAGAACCTCAAGCCG GGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGATCGAT CTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATTC AAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCA TGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTA CTAACTGTCAATCGATCCGTCATGCCCATGCGAAAAAAAAATATTCGTTCTTTGGATGCA AATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCTGTACATAGTCT CTGTTCCTCTTGTAGTCTTGTAGCAAACGATTATCTAGATGTAGTTCTTATTTCTGAATA TGTTCTTCTCATGCTCCAGAGCTCAGCAATCAGCATAACCTCCAGAACTTAACCTAAGTA CATAACTATGCCACTTTCCCCTTTTTCAAACCAGAATTTGAATTACATTACACCAAATAA ACTTCTCCTAAATTGAAACATTACTAGTTGTGTAGTTTCATTTTTTGAACTATCAGATTA GAATTTCCACTACTACGACTTGAATTTAGAGCCTTCTGAATTACTCAAGGCATCTGATTG CTACAAGCTATGAAATGAAACACCATGC



consensusID : consensus_10050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 973
fasta sequence
                              [GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAACATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCACTCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTCATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTCAACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCGCTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGA---CGCCGTACAGGCCGGGGA-GGT-GCCCA-AGGCGTACATCTTCGC-GCTGTTCAACGAGAACCTCA-AGCCGGG-GCCGACCA-CCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC-GTCTCGATCGATCTCGGGTTCAAGGGCCTCGTCC-CTTCGTCGTCGTCGCCATCGTCGTCAATTATCTCATT-CAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATT-ACA-ACCAGATTAATTAGTTACTAACTGTCA-ATCGATCCGTCATGCCCA-TGTG--AAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCCTGTAAAAAAAAAA]

[+] EMBL AK067916             [GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAACATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCACTCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTCATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTCAACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCGCTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGA   CGCCGTACAGGCCGGGGAGGGT GGCCA AGGCGTACATCTTCGC GCTGTTCAACGAGAACCTCA AGCCGGG GCCGACCA CCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC GTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCC CTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATT CAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATT ACA ACCAGATTAATTAGTTACTAACTGTCA ATCGATCCGTCATGCCCA TGTG  AAAAAAAAATATTCGTTCTTTGGATGC                                                               ]
[-] EMBL CB678397             [                                                                                                                                                                                                                                                        CCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCGCTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGAGAAGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGA   CGCCGTACAGGCCGGGGAGGGT GGCCA AGGCGTACATCTTCGC GTTGTTCACCGAGAACCTCA AGCCGGG GCCGACCA CCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC GTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCC CTTAGTCGTGGTTGCCATCGTCGTCAATTATCTCATT CAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGGTACACTTCTGTCATGTACATTCATTTTTTTAGTTTTAAGTTAGTGATCTGATT ACA ACCAGATTAATTAGTTACTAACTGTCA ATCGATCCGTCATGCCCA TGTG  AAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCt             ]
[+] EMBL BI811704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGCCGACCC GCG ACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGA   C CCGTACAGGCCGGGGA GGTGGCCCA AGGCGTACATCTTCGCGGCTGTTCAACGAGAACCTCA AGCCGGGTCCCGACCA CCGAGCGCCATTACGGCCTCTTCAAGCCCGAC GCAGCGGTCTCGATCGATCTCGGGTTCAA GGCCTCGTCC CTTCGTCGTCGTCGCCATCGTCGTCAATTATCTCATT CAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATT ACA ACCAGATTAATTAGTTACTAACTGTCA ATCGATCCGTCATGCCCA TGTGAAAAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTT CCTGTAAAAAAA   ]
[+] EMBL BI812602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccCAAGGGGATCCCCCCGTACA GCC GGGA GGT GCCCACAGGCGTACATCTTCGC GCTGTTCAACGAGAACCTCA AGCC GG GCCGACCACCCGAGC CCAT  CGCCCTCTTCAAGCCCGACGGCAGC GTCTCGATCGATCTCGGGTTCAAGGGCCTCGTCCACTTCGTCGTCGTCGCCATCGTCGTCAATTATCTCATT CAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACCGTACTCGGCTACACTTCTGTCATGGACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATT ACACACCAGATTAATTAGTTACTAACTGTCACATCGATCCGTCATGCCCA TGTG  AAAAAAAAATATTCGTTCTTTGGATGCCAATTCCACGAAAATTGTGGCATAGAAATTCCAAAGAGTTGTCCCTT CCTGTAAAAAAAAAA]
[+] EMBL BM418550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCCCGGGGA GGT GCCCACAGGCGTACATCTTCGC GCTGTTCAACGAGAACCTCATAGCCGGG GCCGACCC CCGAGCNCCCTTAC GCCTCTTCAAGCCCGACGGCAGC GTCTCGATCGATCTCGGGTTCAAGGGCCTCGTCC CTTCGTCGTCGTCGCCATCGTCGTCNATTATCTCATTCCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTGACC ACCCGATTAATTAGTTACTAACTGTCC ATCGATCCGTCATGCCCACTGTGAAAAAAAAAAATATTCGTTCTTTGGATGCCAATTCCCCGAAAATTGTGGCATAGAAATTCCAAAGAGTTGTCCCTTCCCTGTAAAAA     ]


>consensus_10050#1 GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAAC ATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCAC TCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTC ATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTC AACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCG CTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATG TTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATG GAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCC GACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAG GGGACGCCGTACAGGCCGGGGAGGTGCCCAAGGCGTACATCTTCGCGCTGTTCAACGAGA ACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCG TCTCGATCGATCTCGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTCGCCATCGTCGTCAA TTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTA CACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGA TTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGTT CTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCCC TGTAAAAAAAAAA



consensusID : consensus_10050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence
                              [CCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAATTACGCGCTGTTCAAGCCCAACGCCGGCATCTATGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGTACATCTTCGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAAAAAAAAAAAGA]

[-] EMBL CB649622             [CCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAATTACGCGCTGTTCAAGCCCAACGCCGGCATCTATGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGTACATCTTCGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAAAAAAAAAAAGA]


>consensus_10050#2 CCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAATTACGCGCTGTTCAA GCCCAACGCCGGCATCTATGACGCCAAGACGAGGCTGCGCTACGACAACATGTTCGAGGC GCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATGGAGGTGAG GGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCCGACCCGGC GAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAGGGGACGCC GTACAGGCCGGGGAGGGTGGCCAAGGCGTACATCTTCGCGCTGTTCAACGAGAACCTCAA GCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGCGTCTCGAT CGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCAATTATCTC ATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCT GTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTA GTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGTTCTTTGGA TGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAAAAAAAAAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10050#0      GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAAC 60
consensus_10050#1      GAGGTCCTCGGCGGCGCCGACGCCGGCCTCGCCGAGGCCCTCATCGGCGCCGTCGTCAAC 60
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      ATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCAC 120
consensus_10050#1      ATCCACGACGCGCTCAAGATGCTCGGCCTCGCCACCAAGATCGAGCTCACCACGCCCCAC 120
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      TCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTC 180
consensus_10050#1      TCCGAGGCCGTGTTCGCCAACTCCTACCCGCCGTCGGCGTGCGTGTTCCGCGACGACCTC 180
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      ATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTC 240
consensus_10050#1      ATGGTGTACCTCAAGCCGCTGCTGGACTTCTTCTCCAAGACCGGCGCGCCGTTCTACGTC 240
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      AACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCG 300
consensus_10050#1      AACGCCTACCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAACTACGCG 300
consensus_10050#2      --------CCCGTTCCTCGCCTACATGAGCGACCCGGCGCACATCGACGTCAATTACGCG 52
                               ********************************************* ******

consensus_10050#0      CTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATG 360
consensus_10050#1      CTGTTCAAGCCCAACGCCGGCATCTACGACGCCAAGACGAGGCTGCGCTACGACAACATG 360
consensus_10050#2      CTGTTCAAGCCCAACGCCGGCATCTATGACGCCAAGACGAGGCTGCGCTACGACAACATG 112
                       ************************** *********************************

consensus_10050#0      TTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATG 420
consensus_10050#1      TTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATG 420
consensus_10050#2      TTCGAGGCGCAGGTGGACGCGGCCTACTTCGCGCTGGAGGCGGCGGGGTACCCGGAGATG 172
                       ************************************************************

consensus_10050#0      GAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCC 480
consensus_10050#1      GAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCC 480
consensus_10050#2      GAGGTGAGGGTGGCGGAGACCGGGTGGGCGTCCGCCGGCGACGCGACGGAGGCCGGCGCC 232
                       ************************************************************

consensus_10050#0      GACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAG 540
consensus_10050#1      GACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAG 540
consensus_10050#2      GACCCGGCGAACGCGAGGGCGTACAACTTCAACCTCAGGAAGAGGCTGTTCCTGCGCAAG 292
                       ************************************************************

consensus_10050#0      GGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCG------------CTGTTCAACGAG 588
consensus_10050#1      GGGACGCCGTACAGGCCGGGGAGG-TGCCCAAGGCGTACATCTTCGCGCTGTTCAACGAG 599
consensus_10050#2      GGGACGCCGTACAGGCCGGGGAGGGTGGCCAAGGCGTACATCTTCGCGCTGTTCAACGAG 352
                       ************************ ** ********            ************

consensus_10050#0      AACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC 648
consensus_10050#1      AACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC 659
consensus_10050#2      AACCTCAAGCCGGGGCCGACCACCGAGCGCCATTACGGCCTCTTCAAGCCCGACGGCAGC 412
                       ************************************************************

consensus_10050#0      GTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCA 708
consensus_10050#1      GTCTCGATCGATCTCGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTCGCCATCGTCGTCA 719
consensus_10050#2      GTCTCGATCGATCTGGGGTTCAAGGGCCTCGTCCCTTCGTCGTCGTTGCCATCGTCGTCA 472
                       ************** ******************************* *************

consensus_10050#0      ATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCT 768
consensus_10050#1      ATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCT 779
consensus_10050#2      ATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCT 532
                       ************************************************************

consensus_10050#0      ACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAG 828
consensus_10050#1      ACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAG 839
consensus_10050#2      ACACTTCTGTCATGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAG 592
                       ************************************************************

consensus_10050#0      ATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGCGAAAAAAAAATATTCGT 888
consensus_10050#1      ATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGT 899
consensus_10050#2      ATTAATTAGTTACTAACTGTCAATCGATCCGTCATGCCCATGTGAAAAAAAAATATTCGT 652
                       ****************************************** *****************

consensus_10050#0      TCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCC 948
consensus_10050#1      TCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTTGTCCCTTCC 959
consensus_10050#2      TCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAAAAAAAAAAAGA 712
                       ************************************************            

consensus_10050#0      -TGTACATAGTCTCTGTTCCTCTTGTAGTCTTGTAGCAAACGATTATCTAGATGTAGTTC 1007
consensus_10050#1      CTGTAAAAAAAAAA---------------------------------------------- 973
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      TTATTTCTGAATATGTTCTTCTCATGCTCCAGAGCTCAGCAATCAGCATAACCTCCAGAA 1067
consensus_10050#1      ------------------------------------------------------------
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      CTTAACCTAAGTACATAACTATGCCACTTTCCCCTTTTTCAAACCAGAATTTGAATTACA 1127
consensus_10050#1      ------------------------------------------------------------
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      TTACACCAAATAAACTTCTCCTAAATTGAAACATTACTAGTTGTGTAGTTTCATTTTTTG 1187
consensus_10050#1      ------------------------------------------------------------
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      AACTATCAGATTAGAATTTCCACTACTACGACTTGAATTTAGAGCCTTCTGAATTACTCA 1247
consensus_10050#1      ------------------------------------------------------------
consensus_10050#2      ------------------------------------------------------------
                                                                                   

consensus_10050#0      AGGCATCTGATTGCTACAAGCTATGAAATGAAACACCATGC 1288
consensus_10050#1      -----------------------------------------
consensus_10050#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)